Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00861 and RBAM_005280
See
Amino acid alignment /
Visit
BSNT_00861 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:36
# Commandline: needle
# -asequence dna-align/BSNT_00861___yddJ.1.9828.seq
# -bsequence dna-align/RBAM_005280___yddJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00861___yddJ-RBAM_005280___yddJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00861___yddJ-RBAM_005280___yddJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00861___yddJ
# 2: RBAM_005280___yddJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 516
# Identity: 251/516 (48.6%)
# Similarity: 251/516 (48.6%)
# Gaps: 159/516 (30.8%)
# Score: 688.5
#
#
#=======================================
BSNT_00861___ 1 ATGTTTATTTTGAAAAACCTTTTTATTTTTCTTAGTTTGATGATGATGTT 50
||.|.|...||| ||.||..||| ||.||
RBAM_005280__ 1 -------TTGTCAGTCACC--TTCATCCTTC------------TGCTG-- 27
BSNT_00861___ 51 TGTTTTAACTGCATGTGGTGGAAGCAAGTATGATGATGCGATTGATGATG 100
|||||.||.||.||.||.||.||||||.||||.|||.||||.|
RBAM_005280__ 28 -------ACTGCGTGCGGCGGCAGTAAATATGATAATGCAATTAATGAAG 70
BSNT_00861___ 101 TAATTAGCCAATATAA-AGAG-CATAAAGGAAATGACA-CAG----AGAT 143
|.||.|..||..|.|| |.|| ||.|||.||||||..| ||| ||||
RBAM_005280__ 71 TGATGAAGCAGGAGAAGAAAGTCAGAAAAGAAATGCGAGCAGATTCAGAT 120
BSNT_00861___ 144 AAATATTAAAAGAGAGAATGCGATTGTTAGAGTCTATGAAGGGGGCAAAT 193
.|..| .||||||||.||.||.||..||.|.||.|||||.|..||.||||
RBAM_005280__ 121 GAGCA-CAAAAGAGATAACGCCATAATTCGTGTATATGATGACGGGAAAT 169
BSNT_00861___ 194 ATATTCAGTTTGCATTTTATATGCCGGATAACTCTTCACGTGAATTAACA 243
|||||||..||||.||||||..|||.||..|...|||.|||....|.||.
RBAM_005280__ 170 ATATTCAACTTGCGTTTTATCAGCCAGAAGAAAGTTCTCGTAGGCTGACT 219
BSNT_00861___ 244 ACATTTAAGTATTATGAAAAAATAGGAGATAAATATGAAAAGATGACTGA 293
.|.|.|...||||||||.||..|.||||||...|||||..|.|||.|..|
RBAM_005280__ 220 GCTTATTCTTATTATGAGAAGCTTGGAGATTCTTATGAGGAAATGGCACA 269
BSNT_00861___ 294 TATGCCGGGGAATGGAGAAAATGATCGACTTGG-CT-TATCAAGGAAAAC 341
|||||||||..||||.||....||.||.||||| || ||| |.||||||
RBAM_005280__ 270 TATGCCGGGTGATGGTGATGGCGACCGCCTTGGTCTGTAT--AAGAAAAC 317
BSNT_00861___ 342 ACCAGATTATGAAGAAGCAAAAGGTAAAGAAACTAA-------------- 377
|||.||||||.||||.|..|||||.||.|||||.||
RBAM_005280__ 318 ACCTGATTATAAAGAGGTTAAAGGCAAGGAAACAAAAACAATGTGCTTGT 367
BSNT_00861___ 378 --------GTTAGAGGAGTAA----------------------------- 390
|.|||.|||..||
RBAM_005280__ 368 TCATTCCTGATAGGGGAACAATTGTTTTACCGTTAAGTTGTTGTGTGAGA 417
BSNT_00861___ 390 -------------------------------------------------- 390
RBAM_005280__ 418 GCCAGTATGTTAAAATGCTACGTAGATTTAATAATAAAGTTTAGATTCAA 467
BSNT_00861___ 390 ---------------- 390
RBAM_005280__ 468 GGAGATTTATTTATGA 483
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.