Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06250 and RBAM_005300

See Amino acid alignment / Visit BSNT_06250 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:41
# Commandline: needle
#    -asequence dna-align/BSNT_06250___yyaQ.1.9828.seq
#    -bsequence dna-align/RBAM_005300.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06250___yyaQ-RBAM_005300.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06250___yyaQ-RBAM_005300.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06250___yyaQ
# 2: RBAM_005300
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 425
# Identity:     207/425 (48.7%)
# Similarity:   207/425 (48.7%)
# Gaps:         151/425 (35.5%)
# Score: 422.5
# 
#
#=======================================

BSNT_06250___      1 ATGTTAACAAGAGAAGATATCTTTAAACACGTCAAAGAAAAATACGGTAC     50
                     ||          |||       |||      |.|..|||.||.|      
RBAM_005300        1 AT----------GAA-------TTA------TGATGGAATAAAA------     21

BSNT_06250___     51 ATCGCCTGATTACCCGTGGGTGAAATACCCAAAC---TATG-----CTTC     92
                            ||||||   ||..|.|..|..||||||   ||||     |.||
RBAM_005300       22 -------GATTAC---TGCCTAACCTTTCCAAACTCTTATGAAGACCATC     61

BSNT_06250___     93 --TTTGAGACAT------ACATCAA------ACAAAAAATGGTACGGTCT    128
                       |||| ||.||      ||..|||      |||||         ||   
RBAM_005300       62 CTTTTG-GAGATGGTTGGACTGCAATTCGTCACAAA---------GG---     98

BSNT_06250___    129 TATCATGAATGTTCTCCCAGAAAA-ATTAG-GCTTGGATGGTCA-TGGCG    175
                           ||||       .|||||| |||.| .|||  ||..||| |.|||
RBAM_005300       99 ------GAAT-------AAGAAAATATTTGCACTT--ATCTTCACTCGCG    133

BSNT_06250___    176 A--AATAGATAT-TCTAAATCTAAAATGTCCCCCTGAAA-----------    211
                     |  ||.|..||| |.|.||.||.|||||....|||||||           
RBAM_005300      134 ACGAACACTTATGTGTCAACCTTAAATGCGAACCTGAAAGGGCTGATTTT    183

BSNT_06250___    212 -TAAGTGATAGCTT----AAGAAACGGGGAAAATATCTTACCCGGATATC    256
                      ||.|||.|  |||    |||||           |||...||||||||.|
RBAM_005300      184 CTACGTGGT--CTTTTTGAAGAA-----------ATCAAGCCCGGATACC    220

BSNT_06250___    257 ATATGGATAAGGAACATTGGATTTCAATTGTTTTAGA--ACGGACAGAT-    303
                     |||||.|.|||||.|||||||.|.|..||...|||||  |.||||   | 
RBAM_005300      221 ATATGAACAAGGAGCATTGGAATACTCTTACCTTAGATGAGGGAC---TC    267

BSNT_06250___    304 CCAGAAGGCGAAATCTATAACTTAATCGAGCAGAGCTTTCATTT-----A    348
                     |||||...|.|||||.||.||.|..|..||.|.||||||.|..|     |
RBAM_005300      268 CCAGAGCACCAAATCCATGACATGGTAAAGTACAGCTTTGAACTGACAAA    317

BSNT_06250___    349 ACC---AAGTGA-------------    357
                     |||   ||||.|             
RBAM_005300      318 ACCAAAAAGTAAAAAGGAAACATAA    342


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