Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_06250 and RBAM_005300

See DNA alignment / Visit BSNT_06250 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:41
# Commandline: needle
#    -asequence pep-align/BSNT_06250___yyaQ.1.9828.seq
#    -bsequence pep-align/RBAM_005300.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_06250___yyaQ-RBAM_005300.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_06250___yyaQ-RBAM_005300.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06250___yyaQ
# 2: RBAM_005300
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 136
# Identity:      42/136 (30.9%)
# Similarity:    60/136 (44.1%)
# Gaps:          41/136 (30.1%)
# Score: 176.0
# 
#
#=======================================

BSNT_06250___      1 MLTREDIFKHVKEKYGTSPDYPWVKYPN----------YASLRHTSNKKW     40
                                 ..|....|| .:.:||          :.::||..|||.
RBAM_005300        1 ------------MNYDGIKDY-CLTFPNSYEDHPFGDGWTAIRHKGNKKI     37

BSNT_06250___     41 YGLIMNVLPEKLGLDGHGEIDILNLKCPPEISDSLRN-GENILPGYHMDK     89
                     :.||..          ..|...:||||.||.:|.||. .|.|.|||||:|
RBAM_005300       38 FALIFT----------RDEHLCVNLKCEPERADFLRGLFEEIKPGYHMNK     77

BSNT_06250___     90 EHWISIVLERTDPEGEIYNLIEQSFHLTK-------    118
                     |||.::.|:...||.:|:::::.||.|||       
RBAM_005300       78 EHWNTLTLDEGLPEHQIHDMVKYSFELTKPKSKKET    113


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