Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05589 and RBAM_005320

See Amino acid alignment / Visit BSNT_05589 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:05
# Commandline: needle
#    -asequence dna-align/BSNT_05589___ywnB.1.9828.seq
#    -bsequence dna-align/RBAM_005320___ywnB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05589___ywnB-RBAM_005320___ywnB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05589___ywnB-RBAM_005320___ywnB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05589___ywnB
# 2: RBAM_005320___ywnB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 670
# Identity:     446/670 (66.6%)
# Similarity:   446/670 (66.6%)
# Gaps:          59/670 ( 8.8%)
# Score: 1312.5
# 
#
#=======================================

BSNT_05589___      1 ATGAAAATTGGTATTATAGGCGCAAGCGGGAAAGCGGGAAACGAG----A     46
                     .||||||||||.||.||.||.||||.|||.|||||.|||    ||    |
RBAM_005320__      1 TTGAAAATTGGAATCATTGGTGCAACCGGAAAAGCTGGA----AGTCTTA     46

BSNT_05589___     47 TTTTGAAAGAAGC-GAAAACAAGAGACCATGAAGTGACAGCCATCGTCAG     95
                     |.||||||||||| |.||.||.|.|| ||||||||.||.||.||.||.||
RBAM_005320__     47 TCTTGAAAGAAGCGGTAAGCAGGGGA-CATGAAGTAACTGCAATTGTAAG     95

BSNT_05589___     96 AAACGCTTCAAAAGTGCAGGAGCAGGACGTAGCGGTTTTGGAGAAAGATG    145
                     |.|.|||.|||||.|..|.|||.|..|..|.||.||..|.||.|||.||.
RBAM_005320__     96 AGATGCTGCAAAACTTAAAGAGGAAAAGATTGCAGTCATTGAAAAAAATA    145

BSNT_05589___    146 TGTTTGAACTGACTGTGGAAGACATC-----AAGCCTTTCGACGCGGTCG    190
                     |..||||.||.||...|||.|  |||     |||   ||.||.|..|..|
RBAM_005320__    146 TAATTGATCTTACATCGGATG--ATCTAAAAAAG---TTAGATGTAGCAG    190

BSNT_05589___    191 TAAACGCTTTTGGAGCAGCACCCGGCCAAGAACATCTTCATGTTGAAGCA    240
                     |.||.||.||.||.||..||...||..|||||||....|||||.||.||.
RBAM_005320__    191 TTAATGCCTTCGGTGCTCCATTAGGAGAAGAACAGGCACATGTAGATGCT    240

BSNT_05589___    241 GGAAGAGCACTCATCA--GCATTTTAAAGGACGCGAAGCACACAAGATTG    288
                     ||..|.|||.|.||.|  ||| ||.||||||    |.|.|.||||||  |
RBAM_005320__    241 GGCCGGGCATTAATTAGGGCA-TTAAAAGGA----ACGGATACAAGA--G    283

BSNT_05589___    289 C--TTGTTGTTGGCGGAGCGGGAAGCCTGTTTGTTGATGAAGCCAAAACA    336
                     |  |..||||.||.|||||.||.||.||.|.|||.||.|||...|||||.
RBAM_005320__    284 CCGTAATTGTAGGTGGAGCAGGGAGTCTTTATGTAGACGAAAATAAAACT    333

BSNT_05589___    337 ACCCGTTTAATGGATACGCCGGAATTTCCGAAAGAATATT-TGCCAACTG    385
                     ..|.||.||||||||||.||.| ||||||...|||.|.|| |.||.||.|
RBAM_005320__    334 GTCAGTGTAATGGATACACCTG-ATTTCCCGGAGATTTTTATTCCGACAG    382

BSNT_05589___    386 CATCAAA--TCAAGG-CGAGAACCTGAAAGATTTGCAGCAGACAGACTCC    432
                     |  ||||  .||||| || .|||.||.||||..|..||    .|.|||.|
RBAM_005320__    383 C--CAAAGGGCAAGGTCG-TAACTTGCAAGAACTAAAG----GAAACTTC    425

BSNT_05589___    433 ----ATTTCCTGGACGTTCCTCAGTCCTGCGGCATTTTTTGATCCAG-CA    477
                         |||..||||||.||..||||||||.|.||..|.|||||.|||| |.
RBAM_005320__    426 TGATATTAACTGGACATTTATCAGTCCTTCAGCGGTATTTGACCCAGACG    475

BSNT_05589___    478 GGAAAACGGACTGGCTCTTACCAAAAAGGAAAAGACAATGTCATC-----    522
                     |||||| |.|||||.|.|||.||...|||||||||     |||||     
RBAM_005320__    476 GGAAAA-GAACTGGATTTTATCAGTCAGGAAAAGA-----TCATCTTCTT    519

BSNT_05589___    523 GTAAATGCAAAAGGCGGCAGCTATATCAGCTATGCAGATTATGCCATTGC    572
                     ||.|||.|.|||||||..||.|||||||||||||||||.|||||.|||||
RBAM_005320__    520 GTGAATTCGAAAGGCGAAAGTTATATCAGCTATGCAGACTATGCAATTGC    569

BSNT_05589___    573 CGTGTTGGACGAGCTTGAACATCCCGAACACAAAAATGAACGCTTCACAG    622
                     .||.|||||.||..|.|||.||||..||||.|.||||||||||||.||||
RBAM_005320__    570 AGTATTGGATGAAATCGAAAATCCAAAACATATAAATGAACGCTTTACAG    619

BSNT_05589___    623 TGGTAAGCGAAGCGGAATAA    642
                     |.||..|.|||||.||||||
RBAM_005320__    620 TTGTTGGAGAAGCTGAATAA    639


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