Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00981 and RBAM_006000
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:40
# Commandline: needle
# -asequence dna-align/BSNT_00981___ydgK.1.9828.seq
# -bsequence dna-align/RBAM_006000___ydgK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00981___ydgK-RBAM_006000___ydgK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00981___ydgK-RBAM_006000___ydgK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00981___ydgK
# 2: RBAM_006000___ydgK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1224
# Identity: 941/1224 (76.9%)
# Similarity: 941/1224 (76.9%)
# Gaps: 27/1224 ( 2.2%)
# Score: 3624.5
#
#
#=======================================
BSNT_00981___ 1 ATGCTGCACAATCCAACTGGAAAAGAAC-GCTTGGCACTAGCGTTTCTGC 49
||||||||.|||||.||.||.||.||.| |||| ||.||.||.|||||.|
RBAM_006000__ 1 ATGCTGCATAATCCGACCGGTAAGGAGCGGCTT-GCGCTGGCTTTTCTTC 49
BSNT_00981___ 50 TCGGTATGCTTGCTATATTGGGCCCGCTTAATATAGATATGTATTTGCCA 99
||||.||||||||.|||.||||.|||||.|||||||||||||||.||||.
RBAM_006000__ 50 TCGGAATGCTTGCGATACTGGGGCCGCTCAATATAGATATGTATCTGCCG 99
BSNT_00981___ 100 AGTTTTCCTGAAATCGCGGAAGATTTATCAGCAAGTGCTTCACTTGTTCA 149
|||||.|||||||||||.|||||||||...||..|.||.||.|||||.||
RBAM_006000__ 100 AGTTTCCCTGAAATCGCTGAAGATTTAAGCGCCCGCGCATCGCTTGTCCA 149
BSNT_00981___ 150 GTTAAGTTTAACAGCCTGTCTGGTCGGACTTACGATCGGCCAGCTGATTG 199
|.|.||.|||||.||.||||||.|||||||.||.|||||.|||.|..|||
RBAM_006000__ 150 GCTCAGCTTAACCGCATGTCTGATCGGACTGACAATCGGACAGGTTGTTG 199
BSNT_00981___ 200 TCGGGCCGGTCAGCGATGCGCAGGGAAGACGAAAACCGCTATTAATCTGT 249
||||.|||.|.||.||.|||.||||||||.||||||||.|||||.|.|||
RBAM_006000__ 200 TCGGCCCGTTAAGTGACGCGAAGGGAAGAAGAAAACCGTTATTACTATGT 249
BSNT_00981___ 250 ATTTTTTTATTTGCGTTATCTTCTCTGTTTTGTGCACTGTCGCCCAATAT 299
|||||||||||||||||.|.||||||.|||||.||.||..|.||.||.||
RBAM_006000__ 250 ATTTTTTTATTTGCGTTGTTTTCTCTTTTTTGCGCGCTTGCACCGAACAT 299
BSNT_00981___ 300 AACAACTTTAGTGGCTGCGCGTTTTTTACAAGGCTTCACTGCTTCTGCAG 349
.||.||.||||||..|||.||||||.|.|||||.|||||.|||||.||||
RBAM_006000__ 300 TACTACATTAGTGATTGCCCGTTTTCTTCAAGGATTCACCGCTTCGGCAG 349
BSNT_00981___ 350 GGCTTGTGCTGTCTCGCGCAATCGTCCGCGATGTGTTTACCGGAAGAGAG 399
|.||.||..|.||.||.|||||||||.|.|||||||||||.|||||||||
RBAM_006000__ 350 GACTCGTTTTATCCCGTGCAATCGTCAGAGATGTGTTTACGGGAAGAGAG 399
BSNT_00981___ 400 CTTTCTAAATTTTTCTCGCTGTTAATGGTCATTACCGCGGTGGCGCCAAT 449
|||||||||||||||||||||.|.||||||||||||||.||.|||||.||
RBAM_006000__ 400 CTTTCTAAATTTTTCTCGCTGCTGATGGTCATTACCGCCGTCGCGCCGAT 449
BSNT_00981___ 450 GGTTGCGCCTATGACAGGCGGTGCCATTTTGCTTTTGCCGTTCGCAACGT 499
|||.|||||.|||||.||.||.||.|||||.||..|.|||||.|||.|.|
RBAM_006000__ 450 GGTGGCGCCGATGACGGGAGGCGCGATTTTACTGCTTCCGTTTGCATCAT 499
BSNT_00981___ 500 GGCATACAATTTTTCACGT-----CCTCATGATCATCGGATTTTTACTAG 544
|||||||.|||||||.|.| ||| |.|||||.|||||.||.|
RBAM_006000__ 500 GGCATACGATTTTTCTCTTTTTAACCT-----TTATCGGGTTTTTGCTTG 544
BSNT_00981___ 545 TTCTTCTGATTGCATTGAGGTTAAAAGAAACGCTTCCGCCGGAAAAACGG 594
||||..|.|||||..|.|.|.|.|.||||||.||.|||||||||||.|||
RBAM_006000__ 545 TTCTCATCATTGCGCTCAAGCTGACAGAAACCCTGCCGCCGGAAAAGCGG 594
BSNT_00981___ 595 ATTCCAAGCTCAATCGGAACATCCGTCAAAACGATGGGCAGCCTGCTGAA 644
|||||.|||||.|||||||..|||||....||.|||||.|||||||||||
RBAM_006000__ 595 ATTCCGAGCTCCATCGGAAATTCCGTGCGGACAATGGGAAGCCTGCTGAA 644
BSNT_00981___ 645 GGATCGATCCTTTATGGGGTACGCGTTAACTGTCGGATTTATTCACGGGG 694
||||||.||.|||||.||.||.|||.|.||.|||||.|||||||||||.|
RBAM_006000__ 645 GGATCGGTCATTTATCGGCTATGCGCTGACGGTCGGTTTTATTCACGGCG 694
BSNT_00981___ 695 GAAGCTTTGCATATGTGTCTGGTACGCCTTTTGTATACCAGGATATCTAC 744
|.||||||||.|||||.||.||.||||||||.||.||.||||||||.|||
RBAM_006000__ 695 GGAGCTTTGCGTATGTCTCCGGAACGCCTTTCGTGTATCAGGATATTTAC 744
BSNT_00981___ 745 GGGGTGTCGCCGCAGGTATTTAGTATTCTTTTTGGCATTAACGGGCTGGC 794
||.||.|||||.||||||||.|||.||.|.||.|||||.|||||.|||||
RBAM_006000__ 745 GGAGTCTCGCCTCAGGTATTCAGTGTTTTATTCGGCATAAACGGTCTGGC 794
BSNT_00981___ 795 GATTATATCGGGCAGCTTTATCATCGGACGCTTTGGCGGAATCATTCATG 844
|||.||..|.||.||||||||||||||.||.||.|||||.||||||||.|
RBAM_006000__ 795 GATCATTACCGGAAGCTTTATCATCGGGCGTTTCGGCGGGATCATTCACG 844
BSNT_00981___ 845 AAAAAAGCCTGCTTCGTATAGCGGTCATTACGGCTATGATTGCGACGGCT 894
|||||||||||||..|.||.|..||.|||||.||.||||..|||||.||.
RBAM_006000__ 845 AAAAAAGCCTGCTGAGAATCGGCGTGATTACAGCGATGACGGCGACTGCC 894
BSNT_00981___ 895 GTGCTATTAACCATGACCATGATTCACGGTCCTCTTGCTACATTAGTCAT 944
||.||..|...||||||.||.||||||||.||.||.||..||.|.||.||
RBAM_006000__ 895 GTTCTGCTCGTCATGACGATCATTCACGGGCCGCTCGCGGCACTGGTGAT 944
BSNT_00981___ 945 ATCCATTTTCATTTACATGATTACGATCGGCATGGTTCTGACCAGCACGT 994
.||.|||||.|||||.||||||||||||||||||...|||||.|||||.|
RBAM_006000__ 945 TTCAATTTTTATTTATATGATTACGATCGGCATGACGCTGACAAGCACCT 994
BSNT_00981___ 995 TTACCCTGGCCATGGAAAAGCAGGGGCACCGCGCCGGAAGTGCAAGTGCG 1044
||||..||||.||||||||||||||.||||||||.|||||.|||||.||.
RBAM_006000__ 995 TTACATTGGCGATGGAAAAGCAGGGACACCGCGCTGGAAGCGCAAGCGCA 1044
BSNT_00981___ 1045 CTGCTTGGGATGCTCCCGCTGCTCCTTGGTTCAATCGTGTCACCGCTTGT 1094
|||||.||.|||||.|||||.||.||.|||||.||||||||.||||||||
RBAM_006000__ 1045 CTGCTCGGCATGCTTCCGCTTCTTCTCGGTTCCATCGTGTCGCCGCTTGT 1094
BSNT_00981___ 1095 AGGCATTAATGAGACAACAGCCGTTCCGATGGGAGCCATCATGTTTGTAA 1144
.||.||.|||||..|.||.|||||.||||||||.||.||.|||||....|
RBAM_006000__ 1095 GGGGATGAATGAAGCGACGGCCGTGCCGATGGGGGCAATTATGTTCACGA 1144
BSNT_00981___ 1145 CAGCTGTCATCGGCTCACTGGCGTTTTTTGGATTAACGAAAGAACGAGTA 1194
||.|.||.|||||.||..|.||.|||||.|..|||||.|.|.|||
RBAM_006000__ 1145 CATCCGTTATCGGTTCCATCGCTTTTTTCGCCTTAACAACAAAAC----- 1189
BSNT_00981___ 1195 GGGCAGAATTCATAA--------- 1209
.|.||||..||.||
RBAM_006000__ 1190 -CGGAGAAAGCAAAAAAGGAGTGA 1212
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