Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00983 and RBAM_006100

See Amino acid alignment / Visit BSNT_00983 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:40
# Commandline: needle
#    -asequence dna-align/BSNT_00983___ydhC.1.9828.seq
#    -bsequence dna-align/RBAM_006100___ydhC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00983___ydhC-RBAM_006100___ydhC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00983___ydhC-RBAM_006100___ydhC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00983___ydhC
# 2: RBAM_006100___ydhC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 713
# Identity:     492/713 (69.0%)
# Similarity:   492/713 (69.0%)
# Gaps:          64/713 ( 9.0%)
# Score: 1575.0
# 
#
#=======================================

BSNT_00983___      1 ATGGACGATTTTAAATTAGATAAGCCGACTCCC-TACTACCTGCAATTTT     49
                     |||||..||||||||||||||||||| |.|||| ||.||.||||||||||
RBAM_006100__      1 ATGGATAATTTTAAATTAGATAAGCC-AATCCCGTATTATCTGCAATTTT     49

BSNT_00983___     50 ATAACCAGCTAAAAAAAATGATCTTCAACGGGACTTTTAAGCCTGGGGAA     99
                     ||..|||..|.|||||||||||.||..||||||.||||||.||.||.|||
RBAM_006100__     50 ATTCCCAATTGAAAAAAATGATATTTGACGGGATTTTTAAACCGGGTGAA     99

BSNT_00983___    100 CGGATAAATGAAACACAGCTGGCGAAAAGCTTT-GGCGTCAGCCGCTCTC    148
                     |||.|.|||||.||.|||||||| .||.|.||| ||.||||||||.||.|
RBAM_006100__    100 CGGCTGAATGAGACTCAGCTGGC-CAAGGATTTCGGAGTCAGCCGGTCGC    148

BSNT_00983___    149 CGATAAGGGAAGCCATGCGATTGCTTGAGAAAGATGGTTTGTTAAAAGCG    198
                     ||.|.||.|||||||||||..|.|||||.||.||.||..|..|.|..||.
RBAM_006100__    149 CGGTCAGAGAAGCCATGCGGCTCCTTGAAAAGGACGGGCTTCTGACGGCA    198

BSNT_00983___    199 GATGACCGAAATGGGTTT-TCGATCACGTCGTTAACGGCAAAAGATGTAG    247
                     ||.||.|||||.||.||| || ||....|||||..|.|..||.|||||.|
RBAM_006100__    199 GACGATCGAAACGGCTTTGTC-ATTTATTCGTTGTCCGTTAAGGATGTTG    247

BSNT_00983___    248 ATGAGATTTATAAAATCAGAAT-TCCGCTGGAGCAGCTGGCAGTCGAATT    296
                     |.|||||||||||||||||||| ||...||.|.|| |||||.||||||.|
RBAM_006100__    248 AAGAGATTTATAAAATCAGAATGTCACTTGAATCA-CTGGCGGTCGAACT    296

BSNT_00983___    297 AGTCATAGACGAAGCGGACGAAGAAGAG-----CTGACCATACTCGAAAA    341
                     .||.||.||.|||||||..|    ||||     .||||| |..|.|||||
RBAM_006100__    297 GGTTATCGATGAAGCGGCTG----AGAGTGAAATTGACC-TCATTGAAAA    341

BSNT_00983___    342 ACAGCTTGAAGAAACAGAGAAAGCCATTCGCAA------CGGCACGGAAG    385
                     ||||||....||.||.||..|||||||   |||      ||.||   |||
RBAM_006100__    342 ACAGCTGCGGGAGACGGAAGAAGCCAT---CAATAAAGGCGTCA---AAG    385

BSNT_00983___    386 ATACGGAAATCATTCGTTTAAACCAAAAATTTCATGAGCTGCTGGTTGAT    435
                     |.||.||.||.|||...||||||.|....||||||..|||.||.||.|||
RBAM_006100__    386 AGACTGAGATTATTTCCTTAAACGAGTCGTTTCATCGGCTCCTTGTGGAT    435

BSNT_00983___    436 TTCAGCCATAACAGACATTTGAAAAATTTGCTTGAGCATGTAAATGACCT    485
                     |||||||..|||||.|...||...|...|||||||||||||.||||..||
RBAM_006100__    436 TTCAGCCGCAACAGCCGGCTGGCCATGCTGCTTGAGCATGTCAATGTGCT    485

BSNT_00983___    486 GATTCATTTTTGCAGAATTCTTAATTATACCGGCGACCACCGCGCAGAAA    535
                     ||||||||||||||||.|||||||||.||..||.||..||||.||.|||.
RBAM_006100__    486 GATTCATTTTTGCAGAGTTCTTAATTTTAAAGGAGATGACCGTGCGGAAG    535

BSNT_00983___    536 CGATACTGCGTGAGCACCGCAGGATATTTGAAGAAGTGAAAAAG-----A    580
                     ..||.||||.|||||||||.|...|.|||||||||.|.||||||     .
RBAM_006100__    536 TTATTCTGCATGAGCACCGGAAAGTCTTTGAAGAAATAAAAAAGGGCGAC    585

BSNT_00983___    581 AAAACAAAGAAGCAGCCAAACAACATGTGCTGGCTCATTTCAATCATGAC    630
                     ||||||||     ||||...|||.||.||..||..|||.||||.||||| 
RBAM_006100__    586 AAAACAAA-----AGCCGTGCAATATATGACGGAGCATCTCAAGCATGA-    629

BSNT_00983___    631 TG-TGAGCATTTGAA--GCATGTGCT------TGAAGAAGGTAAAGA-GA    670
                     || .||.|||.||||  ||  |||||      .||||||   |.||| ||
RBAM_006100__    630 TGAAGAACATCTGAAAGGC--GTGCTGAGAGCGGAAGAA---ACAGACGA    674

BSNT_00983___    671 AT--TGA------    675
                     ||  |.|      
RBAM_006100__    675 ATCATCACGATAG    687


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