Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02069 and RBAM_006120

See Amino acid alignment / Visit BSNT_02069 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:46
# Commandline: needle
#    -asequence dna-align/BSNT_02069___yjiA.1.9828.seq
#    -bsequence dna-align/RBAM_006120___yjiA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02069___yjiA-RBAM_006120___yjiA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02069___yjiA-RBAM_006120___yjiA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02069___yjiA
# 2: RBAM_006120___yjiA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 317
# Identity:     168/317 (53.0%)
# Similarity:   168/317 (53.0%)
# Gaps:         100/317 (31.5%)
# Score: 404.0
# 
#
#=======================================

BSNT_02069___      1 GTGGCAGCA-CAGACTGATTA-----CAAAAAACAAGTTGTCGGAATCCT     44
                     .||.||||| |||   ||  |     ||||||     ||.|.||      
RBAM_006120__      1 ATGTCAGCAGCAG---GA--AATCGGCAAAAA-----TTTTGGG------     34

BSNT_02069___     45 ACTTTCA--------CTT------GCATTCGTACTCTTTGTGTTCTCTTT     80
                         |||        |||      |..||||...|.||.||.||||||||
RBAM_006120__     35 ----TCATGGCGATGCTTATAGCGGTCTTCGCCGTGTTCGTTTTCTCTTT     80

BSNT_02069___     81 TTCTGAGAGACA-TGAAAAACCGCTTGTTGAGGGAAAAAAACAGGAAAAC    129
                     ||||||||..|| |.|.|||                         |.|||
RBAM_006120__     81 TTCTGAGAATCATTCACAAA-------------------------AGAAC    105

BSNT_02069___    130 TGGCATACTGTCGTCGACAAAGCCTCCGTCAAAAT-TTATGGCAGCCGAT    178
                     |||||.||.|..||.|||.|.||.||.||.||..| ||..|.||||.|||
RBAM_006120__    106 TGGCACACAGCGGTTGACCAGGCGTCAGTGAATGTCTTCGGCCAGCAGAT    155

BSNT_02069___    179 -TAGTTGAAGAAAA--------CAAATTAAAGCAAAAACTCG--GCCATA    217
                      |  |||||.||.|        |||        |||.|||||  ||    
RBAM_006120__    156 CT--TTGAAAAAGACCGTCTGGCAA--------AAACACTCGACGC----    191

BSNT_02069___    218 AAC---AAGCCGATTCTATTTTGACCCTTCTGAAACTCGCCAACGAAAAA    264
                      ||   |.||.||.|||.|||||||.|||.|||||||.||.||.|.|.| 
RBAM_006120__    192 -ACGTGAGGCAGAATCTCTTTTGACTCTTGTGAAACTTGCAAATGCAGA-    239

BSNT_02069___    265 CACATTACAT--TATAA    279
                      ||||.||||  |.|||
RBAM_006120__    240 -ACATCACATCATCTAA    255


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