Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00999 and RBAM_006160
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:40
# Commandline: needle
# -asequence dna-align/BSNT_00999___ydhL.1.9828.seq
# -bsequence dna-align/RBAM_006160___ydhL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00999___ydhL-RBAM_006160___ydhL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00999___ydhL-RBAM_006160___ydhL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00999___ydhL
# 2: RBAM_006160___ydhL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1192
# Identity: 900/1192 (75.5%)
# Similarity: 900/1192 (75.5%)
# Gaps: 56/1192 ( 4.7%)
# Score: 3309.5
#
#
#=======================================
BSNT_00999___ 1 ATGAATTTCAAAGTTTTCCTGCTTGCAGCTTCTACGATTGCAGTCGGATT 50
||||||||||||||.||.|||||||||||.|||||.||.|||||||||||
RBAM_006160__ 1 ATGAATTTCAAAGTATTTCTGCTTGCAGCATCTACCATCGCAGTCGGATT 50
BSNT_00999___ 51 GGTTGAGTTAATTGTGGGGGGAATTCTTCCTCAGATCGCAAATGATTTAG 100
||||||.|||||||||||.||.||||||||.||.|||||....||.||||
RBAM_006160__ 51 GGTTGAATTAATTGTGGGCGGTATTCTTCCGCAAATCGCTTCCGACTTAG 100
BSNT_00999___ 101 ACATTTCCATTGTTTCA--GCCGGACAGCTGATCAGTGTGTTTGCGCTGG 148
|.||.|||||.| ||| ||.||.|||||||||||.|||||||||||.|
RBAM_006160__ 101 ATATATCCATCG--TCAGCGCGGGGCAGCTGATCAGCGTGTTTGCGCTCG 148
BSNT_00999___ 149 GATATGCAGTATCTGGGCCGCTGCTTTTGGCATTGACTGCAAGGATTGAG 198
|.||.||.|||||.||.|||||||||||||||.||||.||||.|..|||.
RBAM_006160__ 149 GTTACGCGGTATCCGGCCCGCTGCTTTTGGCAGTGACGGCAAAGGCTGAA 198
BSNT_00999___ 199 CGGAAGC-GCTTATATCTAATTGCTTTATTTGTTTTCTTCCTTAGCAATC 247
||.|||| |||| |||.||||.||..|.|||.||||||||||.||.||||
RBAM_006160__ 199 CGAAAGCGGCTT-TATTTAATCGCACTGTTTATTTTCTTCCTAAGTAATC 247
BSNT_00999___ 248 TTATCGCCTACTTCAGCCCTAATTTCGCAACACTGATGGTATCTAGGGTA 297
|..|.||.||.|||||.||.||||||||...|||.|||||.||..||||.
RBAM_006160__ 248 TGGTGGCTTATTTCAGTCCCAATTTCGCCGTACTTATGGTGTCACGGGTT 297
BSNT_00999___ 298 TTGGCGGCGATGAGTACAGGGCTGATTGTTGTGCTTTCTTTAACGATTGC 347
.|.||..|.|||||.||||||||||||||.||.|||||||||||||||||
RBAM_006160__ 298 CTCGCTTCCATGAGCACAGGGCTGATTGTCGTCCTTTCTTTAACGATTGC 347
BSNT_00999___ 348 CCCGAAAATTGTTGCGCCTGAATACAGAGCCCGCGCAATCGGAATTATTT 397
.||.|||||.||.|||||||||||||||||.||.||.|||||.||.||||
RBAM_006160__ 348 TCCTAAAATCGTGGCGCCTGAATACAGAGCGCGGGCGATCGGCATCATTT 397
BSNT_00999___ 398 TTATGGGTTTCAGCTCTGCTATCGCATTAGGTGTGCCGCTCGGAATCTTA 447
|.|||||.||||||||.||.||.||.|||||.|||||..||||.||..|.
RBAM_006160__ 398 TCATGGGGTTCAGCTCCGCAATTGCTTTAGGCGTGCCTGTCGGTATTATC 447
BSNT_00999___ 448 ATCAGCGATTCCTTCGGGTGGCGGATTTTGTTCCTTGGCATCGGCCTGTT 497
||||||.||.|||||||.|||||.|||.|||||.|.||.||||||.|.||
RBAM_006160__ 448 ATCAGCAATGCCTTCGGATGGCGCATTCTGTTCTTGGGAATCGGCGTATT 497
BSNT_00999___ 498 GGCGCTGATCTCCATGCTGATTATTTCA--ATCTTCTTTGAAAGAATACC 545
..|.||..|.||||||||||||| ||| .||||.|||||||.||||||
RBAM_006160__ 498 ATCTCTCGTTTCCATGCTGATTA--TCAGCGTCTTTTTTGAAAAAATACC 545
BSNT_00999___ 546 GGCGGAAAAAATGATTCCTTTCCGGGAACAGCTCAAGACGATCGGTAATC 595
.||.||||||||||||||.||.|||||.|||.|||||||||||||.| |
RBAM_006160__ 546 TGCTGAAAAAATGATTCCGTTTCGGGAGCAGATCAAGACGATCGGGA--C 593
BSNT_00999___ 596 TG--AAAATCGCGAGTTCACACCTCGTCACGATGTTTACATTAGCTGGCC 643
.| |||||.||.||..||||.||.|||||..||||||||||.||.||.|
RBAM_006160__ 594 CGCCAAAATTGCCAGCGCACATCTTGTCACCTTGTTTACATTGGCGGGGC 643
BSNT_00999___ 644 ACTACACGCTTTACGCTTACTTTGCGCCGTTTTTAGAAGAG-ACTCTTCA 692
|.|||||.||.||.||.|||||||||||.|||||.||| || ||.|||||
RBAM_006160__ 644 ATTACACACTCTATGCCTACTTTGCGCCTTTTTTGGAA-AGAACGCTTCA 692
BSNT_00999___ 693 CCTGAGCTCTTTCTGGGTCAGCATTTGTTATTTCCTTTTCGGGATATCTG 742
..||||.||..|.||||||||..|.||.||.||..|.|||||..|.||.|
RBAM_006160__ 693 TTTGAGTTCCGTTTGGGTCAGTGTATGCTACTTTTTGTTCGGTCTGTCAG 742
BSNT_00999___ 743 CCGTATGCGGAGGCCCTTTCGGAGGAGCGCTATCTGACCGGCTTGGTTCC 792
|.||||||||.|||||.||||||||...|||.|.||||||..|.||..|.
RBAM_006160__ 743 CGGTATGCGGCGGCCCGTTCGGAGGCTGGCTGTATGACCGTTTAGGAGCA 792
BSNT_00999___ 793 TTTAAGAGCATTTTGCTGGTGACCGGTTCCTTTGCCATCATTATGTTCTT 842
|||||.|||||..||||.|||||||.|||.||.||..|.||..||||..|
RBAM_006160__ 793 TTTAAAAGCATCATGCTTGTGACCGTTTCTTTCGCTCTGATCCTGTTTAT 842
BSNT_00999___ 843 ACTGCCGCTGTCTACATCG---TCT---ATGATTTTCTTTTTGCCTGTCA 886
.||.|||||| |||.|| ||| ||.|||||| .||||||..|
RBAM_006160__ 843 TCTTCCGCTG---ACAACGGTTTCTTTAATCATTTTC---CTGCCTGCGA 886
BSNT_00999___ 887 TGGTGATTTGGGGTCTTCTGAGCTGGAGCCTCGCCCCGGCTCAGCAAAGC 936
|||||||.|||||..|.||.|||||||||||.||.|||||.|||||||||
RBAM_006160__ 887 TGGTGATCTGGGGATTGCTCAGCTGGAGCCTTGCGCCGGCGCAGCAAAGC 936
BSNT_00999___ 937 TATTTAATTGAAATTGCACCTGATTCGTCTGACATTCAGCAAAGCTTTAA 986
||||||||..|||||||.|||||.||.||.||.||||||||||||||.||
RBAM_006160__ 937 TATTTAATCAAAATTGCGCCTGAGTCTTCCGATATTCAGCAAAGCTTCAA 986
BSNT_00999___ 987 CACATCGGCCCTCCAAGTCGGAATTGCCCTTGGCTCAGCCATTGGCGGTG 1036
|||.||.||..|.||..||||.||.||.||.||.||||||||.|||||.|
RBAM_006160__ 987 CACGTCCGCTTTGCAGATCGGCATCGCGCTCGGGTCAGCCATCGGCGGCG 1036
BSNT_00999___ 1037 TTGTTTTGGAT----CAAACGGGTACTGT----GGTGTCAACAGCATGGT 1078
..|| ||| |||||.|||.|||| | |||||||.||||
RBAM_006160__ 1037 GCGT----GATCGGACAAACCGGTTCTGTCACAG----CAACAGCCTGGT 1078
BSNT_00999___ 1079 GCGGCGGGTCAATTGTGATCATCGCTGTCCTGTTTGCTTTCATT-TCTTT 1127
|||||||.|..|||||.||.|||||||||..|||.|||.| ||| |||||
RBAM_006160__ 1079 GCGGCGGTTTGATTGTCATTATCGCTGTCGCGTTAGCTGT-ATTCTCTTT 1127
BSNT_00999___ 1128 AACAAGACCTGTTCAGACAGCAAA--AAAATCCTCCTTGTAA 1167
|||.|||||| |.|.|.||| |||||||.| .|||
RBAM_006160__ 1128 AACGAGACCT-----GCCTGGAAAACAAAATCCGC---ATAA 1161
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