Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01065 and RBAM_006610
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:44
# Commandline: needle
# -asequence dna-align/BSNT_01065___ydjI.1.9828.seq
# -bsequence dna-align/RBAM_006610___ydjI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01065___ydjI-RBAM_006610___ydjI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01065___ydjI-RBAM_006610___ydjI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01065___ydjI
# 2: RBAM_006610___ydjI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1015
# Identity: 787/1015 (77.5%)
# Similarity: 787/1015 (77.5%)
# Gaps: 53/1015 ( 5.2%)
# Score: 3047.0
#
#
#=======================================
BSNT_01065___ 1 ATGTCGTTTTTCAGAAATCAATTAGCGAATGTAGTAGAGTGGGAAGAATT 50
|||...||||||||||||||.|||||.|||||.||.||.|||||||||||
RBAM_006610__ 1 ATGGGTTTTTTCAGAAATCAGTTAGCAAATGTGGTGGAATGGGAAGAATT 50
BSNT_01065___ 51 TAGAGATGATATGATTTTTTATAAATGGAACAATCGTGAAATCAAAAAAG 100
.|||||.||.|||.||||.||||||||||||||.||||||||.|||||||
RBAM_006610__ 51 CAGAGACGACATGGTTTTCTATAAATGGAACAACCGTGAAATTAAAAAAG 100
BSNT_01065___ 101 GGAGCCGTTTAATCATTCGTCCCGGACAGGATGCTGTCTTTTTGAACAAT 150
|.||||||.|.|||||.||.||.||.||||||||..|||||||..||||
RBAM_006610__ 101 GCAGCCGTCTGATCATCCGGCCGGGGCAGGATGCCATCTTTTTATACAA- 149
BSNT_01065___ 151 GGGCGGG----TTGAAGGAGTCTTTCAAGATGATGGCGATTATGATATTG 196
|||| |||||||..|.||.|..|||||.||||||||||||||.|
RBAM_006610__ 150 ---CGGGAAAATTGAAGGGATTTTCCGTGATGACGGCGATTATGATATCG 196
BSNT_01065___ 197 AATCAGAAATTATTCCATTCCTTTCAACGTTAAAGGGCTTTAAGTTTGGC 246
||||||||||.|||||.||.||.||.||..||||.||.||||||||||||
RBAM_006610__ 197 AATCAGAAATCATTCCGTTTCTATCTACACTAAAAGGGTTTAAGTTTGGC 246
BSNT_01065___ 247 TTTAACAGCGGCATGCGAGCTGAGGTGCTGTTTGTCAATACGAAGGAATT 296
|||||||||||||||||.|||||.|||||||||||.|||||||||||.||
RBAM_006610__ 247 TTTAACAGCGGCATGCGGGCTGAAGTGCTGTTTGTGAATACGAAGGAGTT 296
BSNT_01065___ 297 TACCGTAAGATGGGGAACAAAACAGGCGATAAATATTCCGGCAGCGGGAA 346
.|||||.|.||||||.||||||.|.||.||.||.||||||||.||.||.|
RBAM_006610__ 297 CACCGTGAAATGGGGCACAAAAAACGCCATCAACATTCCGGCGGCAGGTA 346
BSNT_01065___ 347 TGCCAGGCGGGATGCCCATTCGCGCAAACGGCACATTTAATTTCAAGGTG 396
||||.|||||.|||||.||.||||||||||||||||||||.||||||||
RBAM_006610__ 347 TGCCGGGCGGTATGCCGATCCGCGCAAACGGCACATTTAACTTCAAGGT- 395
BSNT_01065___ 397 CA-GGACTATATCAGCCTGATTGATAAAATCGCTGGCGTGAAAGATCA-A 444
|| .|||||.|||.|..||||||||||.||.||.||.||.||||| || .
RBAM_006610__ 396 CATTGACTACATCGGATTGATTGATAAGATTGCGGGTGTCAAAGA-CAGC 444
BSNT_01065___ 445 TATTTTGTAGAGGATATTAAAACCCGTATCATTTCTATTCTGGATCAGCT 494
|||||.||.|||||.|||||||.|||.||.|..||||||||.||||||||
RBAM_006610__ 445 TATTTAGTGGAGGACATTAAAATCCGGATTACGTCTATTCTCGATCAGCT 494
BSNT_01065___ 495 TCTCATGAAGTGGATCACAAGAGAAGGGAAAGATATGTTTAATCTTCAAG 544
|.|.|||||.||||||||.||||||||.|||||.|||||.|||||.||..
RBAM_006610__ 495 TTTGATGAAATGGATCACCAGAGAAGGAAAAGACATGTTCAATCTGCAGT 544
BSNT_01065___ 545 CAAACGCTTTTGATATTGCCAAGGGAATTCAAGAGGA-CTTAGATATGC- 592
|.||..|.|||||.||.|..||.||.||||||||.|| ||| |||||||
RBAM_006610__ 545 CGAATTCCTTTGAAATCGGAAAAGGGATTCAAGAAGATCTT-GATATGCA 593
BSNT_01065___ 593 GCTTAATAAGCGACGGGATGACAGTCACTGGTTTTCAA-ATCATGAGCTT 641
|| |.||..|.|||||.|||.|..|.|| ||..||||| ||.||||||||
RBAM_006610__ 594 GC-TGATCGGAGACGGCATGTCGATTAC-GGGCTTCAATATTATGAGCTT 641
BSNT_01065___ 642 TAATTATCCTCAAGAGGTTCAAGAAATGATTACAAAGAACGCTTCCTACG 691
|||.|||||.||.||.|||||.||.||||||||.||.||||||||.||||
RBAM_006610__ 642 TAACTATCCGCAGGAAGTTCAGGATATGATTACGAAAAACGCTTCTTACG 691
BSNT_01065___ 692 GTATGGTTGGGGATGTGAACAGATACCAGCAAATATCAATGACGGATGGA 741
|.|||||.||.|||||||||.|.||.|||||.||.||.||||||||.|||
RBAM_006610__ 692 GCATGGTGGGCGATGTGAACCGCTATCAGCAGATTTCCATGACGGACGGA 741
BSNT_01065___ 742 ATGGCATCCGGAAAGATGAGCGGAGGCGGAGCGGCTTCGGATATGGCTGG 791
|||.|||||||.||.||||.||||.||||.||.||.||.||.|||||.||
RBAM_006610__ 742 ATGTCATCCGGCAAAATGAACGGAAGCGGCGCCGCCTCAGACATGGCGGG 791
BSNT_01065___ 792 AATGATGATGGGAATGAATATGGCCAATCAGATGATGAACCAAATGAATC 841
.||||||||||||||||||..|||.|||||.|||||||||||||||||.|
RBAM_006610__ 792 CATGATGATGGGAATGAATGCGGCAAATCAAATGATGAACCAAATGAACC 841
BSNT_01065___ 842 AAAATCAGCAG-----------------GCACAGTC------ATCAGG-- 866
||||||||||| .||.|||| ||||||
RBAM_006610__ 842 AAAATCAGCAGAACCAGCCGCAGCAAGATCAAAGTCAGCAGAATCAGGGG 891
BSNT_01065___ 867 --CCCACAGTCAACTGGCAGCGGAAG-------CAAACCGAATTTCTGTC 907
..|||.|.|||..||| ||||||| .||.|||||.|||||||
RBAM_006610__ 892 ACGGCACCGGCAAACGGC-GCGGAAGGAGCGGCTAAGCCGAAATTCTGTC 940
BSNT_01065___ 908 CAAACTGCGGAACAAAAACGGGCGAAGCCAATTTTTGTCCGAATTGCGGC 957
|.|||||||||||.|||||||..|..||.||||||||||||||||||||.
RBAM_006610__ 941 CGAACTGCGGAACGAAAACGGAAGGCGCGAATTTTTGTCCGAATTGCGGA 990
BSNT_01065___ 958 CAGAAGCTTGTATAA 972
||||||||||..|.|
RBAM_006610__ 991 CAGAAGCTTGCGTGA 1005
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