Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03933 and RBAM_006620
See
Amino acid alignment /
Visit
BSNT_03933 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:12
# Commandline: needle
# -asequence dna-align/BSNT_03933.1.9828.seq
# -bsequence dna-align/RBAM_006620___yrhL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03933-RBAM_006620___yrhL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03933-RBAM_006620___yrhL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03933
# 2: RBAM_006620___yrhL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1999
# Identity: 852/1999 (42.6%)
# Similarity: 852/1999 (42.6%)
# Gaps: 875/1999 (43.8%)
# Score: 2731.0
#
#
#=======================================
BSNT_03933 0 -------------------------------------------------- 0
RBAM_006620__ 1 ATGTCAGACAAGTCACTGCATCACCGCTATATTCCCGGACTGGATGGACT 50
BSNT_03933 0 -------------------------------------------------- 0
RBAM_006620__ 51 TCGCGCCTTTGCCGTCCTCGCAGTTATCGCATATCATCTGAATTTTAACT 100
BSNT_03933 0 -------------------------------------------------- 0
RBAM_006620__ 101 GGGCCGACGGCGGTTTCATTGGTGTTGATATCTTTTTTGTTTTATCGGGG 150
BSNT_03933 0 -------------------------------------------------- 0
RBAM_006620__ 151 TATTTAATTACATCTATTATATTGCCTGCCCAAGGCAATGCCATCACCCT 200
BSNT_03933 0 -------------------------------------------------- 0
RBAM_006620__ 201 TGATTTGCGTGATTTTTGGGTGCGCCGGATCAGGCGGCTTCTGCCGGCGG 250
BSNT_03933 0 -------------------------------------------------- 0
RBAM_006620__ 251 CTTATCTCATGATTATCACGACGGTCATTTGGGTCGTATTGTTTAACAGC 300
BSNT_03933 0 -------------------------------------------------- 0
RBAM_006620__ 301 GAGCTCCTGCATACCGTACGCGGGGATGCGGTCTCCTCACTTTTTTACAT 350
BSNT_03933 0 -------------------------------------------------- 0
RBAM_006620__ 351 AAGCAATTGGTGGTTTATCTTTCATCAGCTTTCTTATTTCGACAGCTTCG 400
BSNT_03933 0 -------------------------------------------------- 0
RBAM_006620__ 401 GCTCCCCTTCGCCATTAAAAAACCTTTGGTCGCTGGCGATTGAAGAACAG 450
BSNT_03933 0 -------------------------------------------------- 0
RBAM_006620__ 451 TTTTATATCATATGGCCCTTCCTGCTTCTTGCGGGAATGTACATATGTAA 500
BSNT_03933 0 -------------------------------------------------- 0
RBAM_006620__ 501 AACACGGGCCCGGCTTGCGGCCGCGGTCATGTTTCTCGCGTTATGTTCGG 550
BSNT_03933 0 -------------------------------------------------- 0
RBAM_006620__ 551 CAGTCGTAATGAGTATGATGTATGTGCCCGGCGGAGATCCGAGCCGCGTT 600
BSNT_03933 0 -------------------------------------------------- 0
RBAM_006620__ 601 TATTACGGGACGGATACCCGCTCATTTGAATTGCTTCTCGGCTGCGCTTT 650
BSNT_03933 0 -------------------------------------------------- 0
RBAM_006620__ 651 AGCTTTAGTGTGGCCGATGAAACGATTATCTTCCAAACGGCTGCCGAGCA 700
BSNT_03933 1 ---------------TTGCACGCGACTGAATTTTCGGCATTT-------T 28
|| ||||.|||.||..||.|.||.||| |
RBAM_006620__ 701 GCATGAAACACCTGCTT-CACGGGACGGAGCTTGCCGCTTTTGCCGCGCT 749
BSNT_03933 29 GTATTTTAGTGTTGTGTGTCTATTTCACAGATGAATACGAGCCTTTTCTT 78
| .||.|.||.||||.||.|||.||||||||.||.||.||.||.
RBAM_006620__ 750 G-------CTGCTTTGCGTCTTTTACACGGATGAATATGAACCCTTCCTG 792
BSNT_03933 79 TACAGAGGCGGAATGCTATTCATTAGCGTAACTGCCGCAATCCTTATTGC 128
||||..|||||.|||||.||.||.|||.|.||.||.||..|.|||.|.||
RBAM_006620__ 793 TACAAGGGCGGCATGCTTTTGATCAGCATCACCGCAGCTGTTCTTGTCGC 842
BSNT_03933 129 ATGTGTTTGCCATCCGAGCAGCTTTTTAGGCAATCTGCTTTCATGGAGGC 178
||||.|.||||||||||||||||||||.||..||.|.||||||||||.||
RBAM_006620__ 843 ATGTTTATGCCATCCGAGCAGCTTTTTGGGACATGTTCTTTCATGGAAGC 892
BSNT_03933 179 CGCTTCGGTGGCTTGGAGCGAGGTCTTACGGAATTTATCTTTGGCACTAC 228
|||||||||||.|.|||.||||.||.||||||||.||.||||||||.|||
RBAM_006620__ 893 CGCTTCGGTGGATCGGAACGAGATCATACGGAATCTACCTTTGGCATTAC 942
BSNT_03933 229 CCTGTTATTGTGTTAAGCACGCCAGTTCAAGAAATCGGAAACCCTGTTTT 278
||.|||.|.||..|.|||||.||.||.||.|||||||||||.||.||||.
RBAM_006620__ 943 CCGGTTTTCGTACTGAGCACACCCGTGCAGGAAATCGGAAATCCGGTTTA 992
BSNT_03933 279 TTGGCA------------TATCGTGCTAAAGGTCATTGTGACATGTATAC 316
|||||| .|||| || |..||.|..||.|
RBAM_006620__ 993 TTGGCACTGCGCCGTCAGAATCG-GC-----------GCCACTTTCATTC 1030
BSNT_03933 317 TTGCCGAGCTTTCCTATCTTTTTATTGAGAAGCCGGTACGGACACAGGGA 366
||||||||||.||.||.|.|||.|||||..|||||.|.||.||...|||.
RBAM_006620__ 1031 TTGCCGAGCTGTCTTACCATTTCATTGAACAGCCGATCCGCACTGCGGGC 1080
BSNT_03933 367 TTTAGGCCATTTTTCCGC--CGTGTTT-TGATACATAGAATCAAGGAATG 413
||..||||||||||.||| ||||||| ||| |..|..|...||||||
RBAM_006620__ 1081 TTCCGGCCATTTTTACGCCGCGTGTTTCTGA---ACCGCTTTCTGGAATG 1127
BSNT_03933 414 GAAAACGACATCTGTCATCAGCAAAATGTCAATTGGTTTCATTATTTTCG 463
|||.||..|.|||||||||||||.||||||..|.||..|.|||.||..||
RBAM_006620__ 1128 GAAGACATCCTCTGTCATCAGCAGAATGTCGCTCGGCCTTATTCTTGCCG 1177
BSNT_03933 464 CTATACTTATTTTTGCAGGCGGGCTGTCAGGGCTAGCCGGAGAGCAAAAG 513
|.||.||..|.|||||.||||||||||||||..||||||..||..||||.
RBAM_006620__ 1178 CCATTCTCGTATTTGCGGGCGGGCTGTCAGGAATAGCCGAGGAAAAAAAA 1227
BSNT_03933 514 CATCCTACTAAATGGACCTATAGCTCACAAGAAACAAATGCT------GA 557
||.| |..|||||||.|| |.|.|| |||||.| ||
RBAM_006620__ 1228 CAGC---CGCAATGGACGTA---CGCGCA------AAATGATCAGCAAGA 1265
BSNT_03933 558 CACCAGCCAGGCTTCTGGGGATAAAAAG-------------AACGCTGC- 593
.||| ||| ||.|||..|.|.||.|.| ||| |.||
RBAM_006620__ 1266 AACC-GCC--GCCTCTTCGCACAAGACGGCCGATCACGATCAAC-CGGCA 1311
BSNT_03933 594 --AGCAGAT---------AAAAAACACAATCCTGAACAAAAAACAACAGA 632
||.|||| |||||||||| .|.| |.|||| ||||||
RBAM_006620__ 1312 AAAGAAGATGACATTAAGAAAAAACACA--GCGG--CGAAAA--AACAGA 1355
BSNT_03933 633 TTCC-ATTCAGGGTCAAAAGGAAAACAAAGATAGTGGGCAAGAGAC---T 678
..|| ..||| |.||||| |.||.||||| ..|||.|||| |
RBAM_006620__ 1356 CACCGCGTCA--GACAAAA--ACAAGAAAGA-----ACCAACAGACAAAT 1396
BSNT_03933 679 C--ATAAAAAGAAAGAC--------------ACG--CAATCTCAACAGAC 710
| |||.|||||||.|| ||| | |||||||.|.||
RBAM_006620__ 1397 CAAATACAAAGAAAAACGAAGAGAAAAAGGAACGGTC-ATCTCAAAAAAC 1445
BSNT_03933 711 G---------AAAGAACCCGCAGATACTGC----GAAAGAGGTGTTAGCT 747
| ||| ||.|.||.|| |.||||.|||.|.||.
RBAM_006620__ 1446 GGCTGATCCAAAA-------CAAACACAGCCTCAGCAAGACGTGCTGGCC 1488
BSNT_03933 748 ATAGGAGATTCCGTCATGCTTGATATTTCTTCACACCTGCGTCAGTCACT 797
||.||.|||||.||.|||||.||.|||.|.|||.|||||||.|||||.||
RBAM_006620__ 1489 ATCGGTGATTCGGTGATGCTGGACATTGCGTCATACCTGCGGCAGTCCCT 1538
BSNT_03933 798 TTCACATGTGACGATTGATGGAAAGGTAGGAAGACAAATGTCTCAAGCTT 847
..|.|||||.||.||.||.||||||||||||||||||.|.||||||||..
RBAM_006620__ 1539 CCCTCATGTCACCATCGACGGAAAGGTAGGAAGACAAGTCTCTCAAGCAC 1588
BSNT_03933 848 TGGAACTCGCAAGGGAGTACAAGTCTTTTAATCAGCCGAACAAGGCTGTC 897
|..|.|||.|...|||.||...|||.|||||||||||||||||.||.|||
RBAM_006620__ 1589 TCCAGCTCACTTCGGAATATGCGTCATTTAATCAGCCGAACAAAGCGGTC 1638
BSNT_03933 898 ATCATTGAGCTTGGAACCAATGGCTACTTTACAAACAGCCAAATCGAACA 947
|||||.|||.|.||.||.||.|||||.||.||||||||||||||.|||..
RBAM_006620__ 1639 ATCATCGAGTTAGGGACGAACGGCTATTTCACAAACAGCCAAATTGAATC 1688
BSNT_03933 948 ACTGCTTCA-ATCTTTCTCAAAAGCCCATATCTATCTTGTCAATACACGG 996
|||| .||| .||.||.|||||||||.||||||||||||||||.||.||.
RBAM_006620__ 1689 ACTG-ATCAGCTCCTTTTCAAAAGCCGATATCTATCTTGTCAACACGCGT 1737
BSNT_03933 997 GTTCCCCGCCAATGGGAAAGCAAGGTAAATGAATCTTTGCAGCAACAGGC 1046
||.||.||.||.|||||||||||.|||||.|||||.||||..|..|||||
RBAM_006620__ 1738 GTGCCGCGGCAGTGGGAAAGCAAAGTAAACGAATCATTGCGCCGGCAGGC 1787
BSNT_03933 1047 C----CACGCACATCAAAATGTTACGTTAGTTGACTGGCATACAGAAGCT 1092
| |.|||| |||||||.|||.|.||.||.|||||..||.||||.
RBAM_006620__ 1788 CGAGTCTCGCA----AAAATGTGACGCTTGTCGATTGGCACGCAAAAGCA 1833
BSNT_03933 1093 CTTCAGCATCCGGAATATTTTACCCCTGATGGTGTTCACTTGGTTCCTAA 1142
.|.|||||.||.|||||.||.||.||.||.||.||.||..|..|.|||.|
RBAM_006620__ 1834 TTGCAGCACCCTGAATACTTCACACCGGACGGCGTCCATCTCATACCTGA 1883
BSNT_03933 1143 AGGGGCAAAAACTTTGACTGCTCTTATTGTTCAGGCGATGAAATCGTAA 1191
.|||.|.|||.|..||||..|.||.||.|||||..|.||||||||.|.|
RBAM_006620__ 1884 GGGGTCTAAAGCGCTGACATCCCTCATCGTTCAAACAATGAAATCATGA 1932
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.