Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04128 and RBAM_007140
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Amino acid alignment /
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:30
# Commandline: needle
# -asequence dna-align/BSNT_04128.1.9828.seq
# -bsequence dna-align/RBAM_007140.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04128-RBAM_007140.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04128-RBAM_007140.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04128
# 2: RBAM_007140
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1867
# Identity: 860/1867 (46.1%)
# Similarity: 860/1867 (46.1%)
# Gaps: 731/1867 (39.2%)
# Score: 1473.5
#
#
#=======================================
BSNT_04128 1 ATG---AACAACCAAGAAATCGTTCAAAA------ACTATGGAATTTATG 41
||| ||.||..|||| |.||||| |.|||||| |
RBAM_007140 1 ATGGCTAAAAAGAAAGA-----TACAAAAGAAAAGAGTATGGA------G 39
BSNT_04128 42 TAATGTGTTACGTGATGATGGGATTAC----------------------- 68
.|| || ||.||||||||.|
RBAM_007140 40 GAA------AC---ATTATGGGATTCCGCCAATAAATTACGCGGATCCGT 80
BSNT_04128 69 -----CTATCAGCAATATGTAACAGAGTTGACCTA--CTTATTATTCCTC 111
|| |||| ||||| .|||| .||||...|| .|||.|.||..|.
RBAM_007140 81 TGAGGCT-TCAG-AATAT-AAACA-CGTTGTTTTAGGATTAATCTTTTTG 126
BSNT_04128 112 AA-------AATGATGA-----AAGAGCAGGAAACAGAAGGTGTGATTCC 149
|| |.||||.| |||| |.|||| || .||.||.|||
RBAM_007140 127 AAATTTGCTAGTGATAAATTTGAAGA--ACGAAA-AG-CGGAGTTATT-- 170
BSNT_04128 150 AGA--AGGATATCGATGGGATGATTTGTTAGATAAAGAAGGTTTGGAATT 197
||| |||.||..|| |..||.|||| ||| |.|||| ||.||
RBAM_007140 171 AGATGAGGGTAAAGA----AAAATATGTT-GAT----ATGGTT--GAGTT 209
BSNT_04128 198 ------------AAAGACATTTTATC------------AGCGAT--TGTT 221
|||...|||||||| .|.||| .|||
RBAM_007140 210 TTACACCATGAAAAATGTATTTTATCTATCTGAAACTTCGAGATGGAGTT 259
BSNT_04128 222 ACTTGAATTAG--------------GAA------GCAGCGAAAAT-GA-A 249
|||| |.||| ||| |||...||||| || |
RBAM_007140 260 ACTT--AGTAGAGAACGCCAAGCAAGAAGATATTGCATTAAAAATCGATA 307
BSNT_04128 250 CGGCTGCGTCTAATATACAGTGATGCGTCTACAAGTATTGCTGAGCCG-- 297
|.|||...|.||.|.||.|| |.||.|| |.|||
RBAM_007140 308 CCGCTCTTTTTACTGTAGAG----------AAAAATA------ATCCGGC 341
BSNT_04128 298 ---AAAA--------ACTTAGAGAAAATTA----------TCAAATCAAT 326
|||| ||.| ||.||||| |.|||.| |
RBAM_007140 342 ATTAAAAGGCGCGTTACCT---GATAATTATTATTCCCGTTTAAACC--T 386
BSNT_04128 327 TGATG--------------CCCTTGATTGGTACAATGCA----------- 351
||||| .||||.||.|.||||||..|
RBAM_007140 387 TGATGTAAGTAAACTAGCATCCTTAATAGATACAATAAACAACATAAACA 436
BSNT_04128 352 -----AAAG---------AAGAAGGTCTAGGCAATCTTTATGAGGGATTG 387
|||| ||||...|.||||.|...||||||||...||.
RBAM_007140 437 CTATCAAAGATAAGCAGCAAGACATTGTAGGAAGGATTTATGAGTATTTC 486
BSNT_04128 388 TTAGAG-AAG-----AATGCCAG--TGAAAA-GAAATCAGGAGCGGGGCA 428
.|| || ||| |.||.||| .||||| |||| ||||| |
RBAM_007140 487 CTA-AGTAAGTTTGCATTGGCAGAAGGAAAAGGAAA--AGGAG------A 527
BSNT_04128 429 -----ATACTTCACA---CCTCGTGTAT-TAATTG--------------- 454
|||||.||.| |.|.||..|| |.||||
RBAM_007140 528 ATTTTATACTCCAAAAAGCATAGTAAATCTTATTGCAGAAATGCTCGAAC 577
BSNT_04128 455 -ATGTGATGGTTCAATTAATTGACCCGAAAATTGGTGAGCGGTGTGCTGA 503
||.|.|.|||..||||.| |||
RBAM_007140 578 CATATAAAGGTAAAATTTA----------------------------TGA 599
BSNT_04128 504 CCCTGCAGCTGGAACATTCGGTTTCATGATTGCTGCAGACCAAT------ 547
|||.||...||||.||...||| |||.|||.| ||||
RBAM_007140 600 CCCCGCTTGTGGATCAGGGGGT---ATGTTTGTT------CAATCAGTAA 640
BSNT_04128 548 -ATTTAAAGAATCA-AACAGATGACTACTTTGATAT-AGAACCACAAGA- 593
|||||..|||||| |.||| .||.|| ||| ||||
RBAM_007140 641 AATTTATTGAATCACATCAG----------GGAAATAAGA-----AAGAT 675
BSNT_04128 594 --AGCTGAGTTCCAAAAGAAAGAAGCCTTTGTAGGTATGGAACTTGTTAA 641
|.| ||.|| |..||.||.| ||||..||||
RBAM_007140 676 ATATC-GATTT---ACGGACAGGA----------GTATACAACT------ 705
BSNT_04128 642 AGATACCCATCGTCTGGCACTCATGAATGCTTTGCTTCATAATATCGAAG 691
|.| |||.|....||||||...||||| |.|.||| |||| .||
RBAM_007140 706 ACA-ACCTACAAGCTGGCAAAGATGAA--CCTAGCT--ATAA-----GAG 745
BSNT_04128 692 GA----CG------CTTGGA-ACAAGGC----GATACTTTATCGGGTAAC 726
|| || |||||| |.|..|| ||||||||.| .|||.
RBAM_007140 746 GAATTTCGGCTAATCTTGGAGAGACTGCTGCTGATACTTTCT---TTAAT 792
BSNT_04128 727 GGGAAATGGATGAAGAACTT-------TGATGTTATTTTAACAAACCCGC 769
|...|| .||.|||| || ||||.|||||.|..||||.||.|
RBAM_007140 793 GACCAA--CATAAAGA--TTTGAAGGCTGATTTTATTATGGCAAATCCTC 838
BSNT_04128 770 CGT----TCGGTACCAAAAAAG-GCGGAGAACGGGT---------ATCCC 805
||| ||.|.|.|||...|| ||.|||||.|.|| || ||
RBAM_007140 839 CGTTTAATCAGAAACAATGGAGAGCTGAGAATGAGTTAACAGATGAT-CC 887
BSNT_04128 806 GCG-----------ACGATTTAACGTTTGAAACATCGA-ATAAACAGTTG 843
||| ||||..||.| ||.|.|| .||| .|.|.
RBAM_007140 888 GCGTTGGGCAGGTTACGAAGTACC-------ACCTAGAGGTAA--TGCTA 928
BSNT_04128 844 AATTTCCTGCAGTTGATT---TATAACGCTT-TAAA-------AGATGAT 882
|.|.|.|| |.|||| .|||..|.|| |||| ||| ||
RBAM_007140 929 ACTATGCT----TGGATTCTCAATATTGTTTCTAAACTATCTGAGA--AT 972
BSNT_04128 883 GGAAATGCAAGAGCAGCGGTTATCTTGCCCGATAATGTCTTGTTTGAAAG 932
|| || .|||.|.|.||.|.|||.|..||..||..|| |||
RBAM_007140 973 GG---TG---TAGCCGGGTTTCTATTGGCGAATGGTGCATT------AAG 1010
BSNT_04128 933 CGGGATTGGC------TCACAAATTCGTCGTGACTTGA-TGAA------- 968
|||...|||| |...||||.|||....|.|||| ||||
RBAM_007140 1011 CGGTGGTGGCGATGAATATAAAATACGTAAGAAATTGATTGAAAATGATC 1060
BSNT_04128 969 ----CAAATGTAACTTACACACGATTTTACGCTTAC--CAACAGGAATTT 1012
|.|||.||.| |||.|| |||| |||.| .||.|
RBAM_007140 1061 TAGTCGAATCTATC---------ATTGTA---TTACCGCAAAA--TATGT 1096
BSNT_04128 1013 TTTATGCGCA-------AGGTG-------------------TAAAAACGA 1036
|||||.| || |.||| |||||||.|
RBAM_007140 1097 TTTATAC-CACTAACATAAGTGTTACGCTTTGGATCCTGAATAAAAACAA 1145
BSNT_04128 1037 A---TGTCTTATTCTTTAC---AAGGGGA----ACAACAG-------ACC 1069
| ..||.||.|.||.|| ||.||.| |.||.|| ||
RBAM_007140 1146 AAAGGCTCGTACTATTGACCAAAATGGAAGTTTAAAAAAGTATCGTAAC- 1194
BSNT_04128 1070 AAGATAACACGAA-----------GGATGT-------ATGGGT-----AT 1096
|||.||.|.||| ||||.| |||||| ||
RBAM_007140 1195 -AGAGAAAAAGAAGTATTATTTATGGATTTGCGAGAAATGGGTGTCCCAT 1243
BSNT_04128 1097 ATGA----------------TCTTCGGACAAATATGACTTCATT------ 1124
.||| |.||||| ||.|||| .|||
RBAM_007140 1244 TTGAAAAAAAATATACTCAGTTTTCGG---AAGATGA---TATTACAAAG 1287
BSNT_04128 1125 -TGGCAAACGTA-ATCAGCTAACAATGGCTCATTTTGAAC--ACTTCATG 1170
|..|||||.|| |||| |||| |||| ||| |||
RBAM_007140 1288 GTTACAAACATATATCA--TAAC--TGGC--------AACAAACT----- 1320
BSNT_04128 1171 AAGGCATATGTAGCTGAAGACCGATCGAAAGT-----GGAAGATGAACGT 1215
|..||||.|.||.||.|.| |||.| ||| ||..| ||
RBAM_007140 1321 ---GATTATGAAACTAAATATC-----AAAATATCCCGGA--ATTCA-GT 1359
BSNT_04128 1216 T-----GGAACAAGTTTTCGCGAGAAGAAATTGCAAAGAAGGATGAC--- 1257
| |.|||| ||| |||||..|||.|||.||.|||..|
RBAM_007140 1360 TACAGCGCAACA---TTT-----GAAGAGGTTGTAAATAAAGATTTCTCA 1401
BSNT_04128 1258 --AGT-----CTAGATATCGGATTGA--TTGC------TGACGA------ 1286
||| .||.||| .||||| |||| ||||||
RBAM_007140 1402 TTAGTGCCAAGTAAATA---CATTGAGTTTGCTAATCGTGACGAGGATAT 1448
BSNT_04128 1287 -GTCTTT-ATCATCATATGAAAACCTACCA---------------GACCC 1319
|.|||| ||.|..|.|||||| |||..| ||||.
RBAM_007140 1449 TGACTTTGATGAGAAGATGAAA--CTAATACAAAGTGAATTTGTTGACCT 1496
BSNT_04128 1320 TATTGAATCGGCAGAAGAGGCGATTGCGAAACTTCAACAAGCAATGGAGT 1369
..||.||.|.|.||||| |||..|| ||.|||.|
RBAM_007140 1497 GCTTAAAGCTGAAGAAG-------------ACTCTAA-----AAAGGATT 1528
BSNT_04128 1370 TGTTAAATGAAGTGGTGGAAGAATTACGTGCTGTTGAAGAGGATGAGGTG 1419
|.|||| |||| |.||.|.||| |.||||.
RBAM_007140 1529 TATTAA---AAGT------------------TTTTAAGGAG--TTAGGTT 1555
BSNT_04128 1420 GTCAAA--AAATGA--- 1431
.|.||| .|||.|
RBAM_007140 1556 ATGAAATCGAATTATAA 1572
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