Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01328 and RBAM_008170

See Amino acid alignment / Visit BSNT_01328 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:01
# Commandline: needle
#    -asequence dna-align/BSNT_01328___yfkC.1.9828.seq
#    -bsequence dna-align/RBAM_008170___yfkC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01328___yfkC-RBAM_008170___yfkC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01328___yfkC-RBAM_008170___yfkC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01328___yfkC
# 2: RBAM_008170___yfkC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 854
# Identity:     636/854 (74.5%)
# Similarity:   636/854 (74.5%)
# Gaps:          37/854 ( 4.3%)
# Score: 2336.0
# 
#
#=======================================

BSNT_01328___      1 ATGAAAGAAACACTTACGGAGATTTTTCAAAATAAAATCGTCGATATTCT     50
                     |||.||...|||.|||||||.|||||..|||..|||.|.||.||.||..|
RBAM_008170__      1 ATGGAAACGACAATTACGGACATTTTGAAAAGCAAAGTGGTTGAGATCAT     50

BSNT_01328___     51 CCTCGTTGCCGTTATCCTTTGGATCGGTGTCTTTATCATCAACCGGCTGG    100
                     |.||||.||..|..|.||||....||||||.|||.|.||||||||..|.|
RBAM_008170__     51 CATCGTCGCTCTCGTGCTTTACGCCGGTGTTTTTCTGATCAACCGCTTTG    100

BSNT_01328___    101 TACAGCTATTTTTTAAACGGACGGATTTTATTGAAGAAA---AAAAGGAA    147
                     |.|||.|.||.||||||||.||||| |||.|||.||.||   |||.||  
RBAM_008170__    101 TCCAGGTGTTATTTAAACGCACGGA-TTTCTTGGAGGAACGGAAAGGG--    147

BSNT_01328___    148 AAAACGATTGAAAGCCTTGTCCGTTCTGTCACCCAGTATACGGCGACAAT    197
                     |||||||||||||||||.|||||.||..|||||||||||||||||||.||
RBAM_008170__    148 AAAACGATTGAAAGCCTCGTCCGATCCATCACCCAGTATACGGCGACGAT    197

BSNT_01328___    198 TGGTTTTATCTTTTACGTTATTTCTTTATTTGTGCATGATTTCGGCAAGA    247
                     .|||||||||||||||||.|||||||||||.||.||||||||||||...|
RBAM_008170__    198 CGGTTTTATCTTTTACGTCATTTCTTTATTCGTTCATGATTTCGGCCGAA    247

BSNT_01328___    248 TATTGGCCGGGGCGGGCGTAGCAGGTATCGTGATCGGTTTTGGCGCCCAA    297
                     |.||.|||||||||||.||.||.||||||||.||||||||.||||||||.
RBAM_008170__    248 TTTTAGCCGGGGCGGGTGTTGCCGGTATCGTCATCGGTTTCGGCGCCCAG    297

BSNT_01328___    298 TCGCTGATCAAAGATGTGCTGGCTGGTGTGTTCTTAATATATGAACGCCA    347
                     |||.|.|||||.||..|..||||.|||||.||.||||||||.||||||||
RBAM_008170__    298 TCGTTAATCAAGGACATATTGGCCGGTGTCTTTTTAATATACGAACGCCA    347

BSNT_01328___    348 GCTGCACAAAGGCGATTATGTCACCGTCAACAACTTGTTCAACGGGACAG    397
                     |||.||.|||||.||||||||.||..|.|||||..||||||||||.||||
RBAM_008170__    348 GCTTCATAAAGGTGATTATGTGACGATTAACAATCTGTTCAACGGCACAG    397

BSNT_01328___    398 TGGAGGAAATCGGCCTCCGCTCGCTGCAAATCCGGGAATGGAGCGGGAAG    447
                     |.||.||||||||.|||||.||.||.||.|||||.||.||||.|||.|||
RBAM_008170__    398 TCGAAGAAATCGGACTCCGTTCCCTCCAGATCCGTGAGTGGACCGGCAAG    447

BSNT_01328___    448 CTGCTCACCATCAGC-AACGGCGAGGTCAGACAAATAGAGAACTATAATA    496
                     |||||.||||| |.| |||||.|||||||||||..|..|.||||||||.|
RBAM_008170__    448 CTGCTTACCAT-ATCTAACGGTGAGGTCAGACAGCTTCAAAACTATAACA    496

BSNT_01328___    497 TTGATTTTATGCGGATTACCGAATCCTTTCTTATCAGCTTTAAAGAAGAT    546
                     ||||||||||||||||||||||.|||.|..|.|||||.|..||.||||||
RBAM_008170__    497 TTGATTTTATGCGGATTACCGAGTCCGTCGTGATCAGTTACAAGGAAGAT    546

BSNT_01328___    547 CCGGACCGCGTGTACAGCGTGTTGGAAGAGGCATGTGACATGCTGAATGA    596
                     ||.||.||.||.||...|||.||.|||.|.||.||.||.|||||.|||||
RBAM_008170__    547 CCCGAGCGGGTATATGCCGTCTTAGAAAAAGCCTGCGATATGCTCAATGA    596

BSNT_01328___    597 AGAGCTTCGTGATTCATTGAAGCGGGATGAATTCGGCAATCCGACAGAAC    646
                     .||||||||.||||||.||||||||||||||||...||||.||||.||.|
RBAM_008170__    597 TGAGCTTCGCGATTCACTGAAGCGGGATGAATTTCTCAATGCGACGGAGC    646

BSNT_01328___    647 CGTTTCAAATCCACGGCATCACCGCATTGA-----ATAAAATCAATC-GC    690
                     ||||||||.|.||.||.||.|      |||     |..||||.||.| |.
RBAM_008170__    647 CGTTTCAAGTGCATGGAATTA------TGAGTCTGAACAAATTAACCAGA    690

BSNT_01328___    691 GGCGTCGAATTTACGGTTAAAGGCATGGTGAAAGATGATGATTATTTCAG    740
                     |||.|.||||||||.||.|||||||||||..||||....||.||.|||..
RBAM_008170__    691 GGCATTGAATTTACAGTGAAAGGCATGGTTCAAGACACAGAATACTTCTC    740

BSNT_01328___    741 TGCCAGCCTTGCAGTCAGACGGGTTCTCGTTCGCCAGCTCTACCAAAACA    790
                     .||.||||||||.||.|||||.|||||.|..||..||||.|||.|.||||
RBAM_008170__    741 GGCGAGCCTTGCGGTGAGACGCGTTCTTGCCCGGGAGCTGTACAACAACA    790

BSNT_01328___    791 ATGTGCAAATGCTTGAGGAAGCGGTCCGAATCGAGAGA-ACCCAATAA--    837
                     ||.|||||.||||.||||||     ..|.|||     | ||.|||.||  
RBAM_008170__    791 ATCTGCAATTGCTCGAGGAA-----ATGTATC-----ACACACAAAAAAG    830

BSNT_01328___    837 ----    837
                         
RBAM_008170__    831 CTGA    834


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01328 and RBAM_008170

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
