Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02364 and RBAM_013940
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:05
# Commandline: needle
# -asequence dna-align/BSNT_02364.1.9828.seq
# -bsequence dna-align/RBAM_013940___ykuP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02364-RBAM_013940___ykuP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02364-RBAM_013940___ykuP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02364
# 2: RBAM_013940___ykuP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 493
# Identity: 323/493 (65.5%)
# Similarity: 323/493 (65.5%)
# Gaps: 74/493 (15.0%)
# Score: 1063.0
#
#
#=======================================
BSNT_02364 1 TTGGCTAAGATTTTGCTTGTTTATGCAACAATGTCAGGCAACACTGAAGC 50
.|||..||..|.|||||||||||.||.|||||||||||.|||||.||.||
RBAM_013940__ 1 ATGGGGAATGTATTGCTTGTTTACGCCACAATGTCAGGAAACACCGAGGC 50
BSNT_02364 51 AATGGCAGATTTAATTGAAAAGGGGCT--TCAGGAGGCGGAAGCAGAAGT 98
.|||||.||||||||||||||.||||| || ||.||..|||||...||
RBAM_013940__ 51 GATGGCGGATTTAATTGAAAAAGGGCTGATC--GAAGCACAAGCATCCGT 98
BSNT_02364 99 AGACCGTTTCGAAGCAATGGATATTGATGATGCCCAGCTGTTTACCGATT 148
||||.|.|..|||||.|||||||| |.|||||.|.||.||||..||||
RBAM_013940__ 99 AGACAGATATGAAGCGATGGATAT---TCATGCCGAACTTTTTAATGATT 145
BSNT_02364 149 ATGACCATGTCATAATGGGAACCTACACGTGGGGAGACGGAGATCTGCCT 198
|.||..||.|..||.|.||.||.||.||||||||||||||.|||||.|||
RBAM_013940__ 146 ACGAGTATATTTTATTAGGCACATATACGTGGGGAGACGGGGATCTTCCT 195
BSNT_02364 199 GATGAATTTTTAGATCTTGTTGAAGACATGGAGGAGATTGATTTTTCCGG 248
||||||.|..|.|||.|||.||||||.|||||..|..|.||.|||...||
RBAM_013940__ 196 GATGAAATGCTCGATATTGCTGAAGATATGGAAAACCTGGAGTTTATAGG 245
BSNT_02364 249 TAAAACATGCGCTGTATTCGGTTCTGGTGATACAGCATATGAATTTTTCT 298
.|||||||..|||.|.||||||||.||.|||||..|.|||||.|||||.|
RBAM_013940__ 246 GAAAACATTTGCTTTGTTCGGTTCCGGAGATACGTCCTATGAGTTTTTTT 295
BSNT_02364 299 GCGGAGCGGTTGATACGCTCGAATCAAAAATAAAAG-AAT--------GC 339
||||||||||||| |||||...| ||||| ||| ||
RBAM_013940__ 296 GCGGAGCGGTTGA------CGAATTGGA---AAAAGTAATCACGGCCCGC 336
BSNT_02364 340 GG-TGGCGACATTGTGCTGCCTTCGGTAAAAATCGAAAATAATCCAGAAG 388
|| .|||| ..|.||||||||..||||.|||||.|||||.||.||.||.|
RBAM_013940__ 337 GGCGGGCG-GGTGGTGCTGCCGGCGGTCAAAATTGAAAACAACCCTGAGG 385
BSNT_02364 389 ---GTGACGAAGAGGA------AGAATTAATAAACTTTGGGAGACAATTC 429
||||.|||||.|| .||| ||.||.|||||.||.
RBAM_013940__ 386 GCAGTGAGGAAGAAGAGCTCCGGGAA---------TTCGGAAGACAGTTT 426
BSNT_02364 430 GCAAAGAAAAGCGGATGCGCTGT------------CTGA---- 456
|| .||||||| |.||
RBAM_013940__ 427 GC-------------CGCGCTGTGCAGCCAGCCGGCAGAATAA 456
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