Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02799 and RBAM_017230
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:45
# Commandline: needle
# -asequence dna-align/BSNT_02799.1.9828.seq
# -bsequence dna-align/RBAM_017230___ynbA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02799-RBAM_017230___ynbA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02799-RBAM_017230___ynbA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02799
# 2: RBAM_017230___ynbA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1404
# Identity: 983/1404 (70.0%)
# Similarity: 983/1404 (70.0%)
# Gaps: 162/1404 (11.5%)
# Score: 3715.5
#
#
#=======================================
BSNT_02799 1 TTGAGAGGTCTGTTTTTTGCTCGTATTTCCGCTTTTCAAAGCAATCGATT 50
RBAM_017230__ 0 -------------------------------------------------- 0
BSNT_02799 51 TGTGGTATACACATGCAGGGTTTGGTATGATAATACTACTGCCCAATATG 100
RBAM_017230__ 0 -------------------------------------------------- 0
BSNT_02799 101 CAAAAGAAAGGAACATCCATTTGAACGAACAAGAAACGATTCAGGAGAAA 150
|||||||||||.|| ||||.|||
RBAM_017230__ 1 --------------------TTGAACGAACAGGA--------AGGAAAAA 22
BSNT_02799 151 --------GCCATTTTAGTCGGATGTCAGCTGCCGCATATCACGGATGAG 192
|.||||||.|||||.||.|||||.|||||.||.||.||||||
RBAM_017230__ 23 AAGAAACGGTCATTTTGGTCGGCTGCCAGCTTCCGCACATGACAGATGAG 72
BSNT_02799 193 CATTTTGAAAATTCTATGGAAGAGCTAGCATCTCTGACGAAAACAGCAGA 242
||.||||||.||||||||||||||||.||.||..||||.|||||.||.||
RBAM_017230__ 73 CACTTTGAACATTCTATGGAAGAGCTTGCTTCATTGACAAAAACGGCTGA 122
BSNT_02799 243 CGGAAAAGTACTGACCAGCGTCACACAAAAACGGAACAGGGCTGACGCCG 292
|||||..||.||||||.|..|.||.||||||||||||||.||.||.||||
RBAM_017230__ 123 CGGAACGGTGCTGACCCGGATTACGCAAAAACGGAACAGAGCGGATGCCG 172
BSNT_02799 293 CTACATATATAGGAAAAGGGAAGGTAGAAGAGCTGAAGGCACTGGTG-GA 341
|||||||||||||.||.|||||.|||||.|||||||||||.|| ||| ||
RBAM_017230__ 173 CTACATATATAGGCAAGGGGAAAGTAGACGAGCTGAAGGCGCT-GTGTGA 221
BSNT_02799 342 AGAGCTTGAAGCTGATCTCCTCATCTTTAATGATGAACTGTCGCCAAGTC 391
||||||||||||.|||||..||||.|||||||||||||||||.||.||.|
RBAM_017230__ 222 AGAGCTTGAAGCAGATCTGATCATTTTTAATGATGAACTGTCACCGAGCC 271
BSNT_02799 392 AGCTGAAGTCATTGGCAACAGCAATTGAAGTGAAGATGATTGACCGCACG 441
||||.||.|||.|.||.||.||||||||||.||||||.||.|||||||||
RBAM_017230__ 272 AGCTTAAATCACTCGCCACTGCAATTGAAGCGAAGATCATCGACCGCACG 321
BSNT_02799 442 CAATTGATATTAGATATTTTTGCAAAGCGGGCGAGAACGAGAGAAGGCAA 491
||..|.||.||.||||||||.|||||..||||||..|||||||||||.||
RBAM_017230__ 322 CAGCTTATTTTGGATATTTTCGCAAAAAGGGCGAAGACGAGAGAAGGAAA 371
BSNT_02799 492 ACTTCAAATTGAGCTGGCTCAGCTGCAATATGCACTGCCGCGTCTGACGG 541
.|||||.||.||..||||.|||||.|||||.||.|||||||||||||..|
RBAM_017230__ 372 GCTTCAGATCGAATTGGCCCAGCTTCAATACGCGCTGCCGCGTCTGAGCG 421
BSNT_02799 542 GACAAGGGATCAATCTCTCCCGGCAAGGCGGAGGAATTGGGGCAAGAGGT 591
|||||||.|||||||||||..|.||||||||.|||||.|||.|.|||||.
RBAM_017230__ 422 GACAAGGAATCAATCTCTCAAGACAAGGCGGCGGAATCGGGACGAGAGGG 471
BSNT_02799 592 CCCGGGGAAACGAAACTGGAAACCGACCGCCGCCATATCAGAAATCGCAT 641
|||||.||.||.||.||.|||||.|||||.|||||.||.|||||.|||||
RBAM_017230__ 472 CCCGGTGAGACAAAGCTTGAAACAGACCGGCGCCACATTAGAAACCGCAT 521
BSNT_02799 642 TCATGAAATCAACACACAGCTTTCCACTGTCATTCGCCATAGAAGCCGAT 691
.||.|||||.|||...|||||.||.||.||.|..|||||.||||||||.|
RBAM_017230__ 522 ACACGAAATTAACGTGCAGCTGTCAACGGTTACCCGCCACAGAAGCCGTT 571
BSNT_02799 692 ACCGTGAAAGAAGAAAGAAAAACGGTGTGCTTCAAATTGCGCTTGTCGGC 741
|.||.||.|||.|.||.||.|||||.||||||||...|||.||.|||||.
RBAM_017230__ 572 ATCGGGAGAGACGTAAAAAGAACGGCGTGCTTCAGGCTGCACTCGTCGGG 621
BSNT_02799 742 TATACAAACGCAGGGAAATCAACATGGTTCAACCGCCTGACGAGTGCTGA 791
|||||.||.||.||.|||||||||||||||||.|...|.||.||..||||
RBAM_017230__ 622 TATACCAATGCCGGAAAATCAACATGGTTCAATCAATTAACAAGCTCTGA 671
BSNT_02799 792 CAGCTATGAAGAAGATCTCCTGTTTGCCACGCTGGACCCGATGACCAGAA 841
||||||||||||||||||.||||||||.|||||.||.||||||||.||||
RBAM_017230__ 672 CAGCTATGAAGAAGATCTGCTGTTTGCAACGCTTGATCCGATGACGAGAA 721
BSNT_02799 842 AAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACAGTAGGA 891
|.||||..||.||||||||||||||.||.|||.|.||.|||||.||.||.
RBAM_017230__ 722 AGATGGCGCTCCCAAGCGGCTACAGCGTCCTTTTGTCTGATACGGTCGGC 771
BSNT_02799 892 TTTATTCAGGATCTTCCGACGACATTGATTGCTGCATTCCGCTCAACGCT 941
||.|||||||||.|.||||||||..|||||||.||.||||||||||||||
RBAM_017230__ 772 TTCATTCAGGATTTGCCGACGACGCTGATTGCCGCTTTCCGCTCAACGCT 821
BSNT_02799 942 TGAGGAAGTAAAAGAAGCGGATTTGATCCTGCATTTAATTGATTCTTCAA 991
|||||||||.||.|||||.||.||||||.|.|||.|.||||||||.||.|
RBAM_017230__ 822 TGAGGAAGTGAAGGAAGCAGACTTGATCATTCATGTCATTGATTCATCCA 871
BSNT_02799 992 ATGAGGATTATGCGGGACATGAAAAAACAGTGCTTCGG-CTGCTTGAGGA 1040
||||.||||||||.||.||||||.|.||.|| |.|||| |||.|..|.||
RBAM_017230__ 872 ATGAAGATTATGCCGGGCATGAACAGACGGT-CCTCGGTCTGTTAAAAGA 920
BSNT_02799 1041 GCTTGAAGCAGATGATATCCCGATGCTGACGGCTTACAATAAACGTGATC 1090
||||||.|||||||||||.|||.|||||||.|||||.||.|||||||||.
RBAM_017230__ 921 GCTTGAGGCAGATGATATTCCGGTGCTGACCGCTTATAACAAACGTGATG 970
BSNT_02799 1091 AAAAACTGCCTGATTTTATACCGTCCGCCG--GAAGGGATCACATTATGG 1138
|.|.|||.|||||.||.||.|||.|.||.| ||||| .|||||.|||.
RBAM_017230__ 971 AGACACTTCCTGACTTCATCCCGACAGCGGGAGAAGG--CCACATCATGA 1018
BSNT_02799 1139 TCAGTGCGA-AATTTGAGGACGACGCTGCAGCCTTTAA----AGAAGCG- 1182
||||.||.| ||| .|.||..|.||.||| || |.|||||
RBAM_017230__ 1019 TCAGCGCCAGAAT----CGCCGGGGATGAAGC----AAAACTAAAAGCGG 1060
BSNT_02799 1183 -ATTC--AGCGCTATTTGCGCCAAGAACTGTTAACGTCTTTTGAAGCACA 1229
|.|| ||| .||||||||||..||.|||.|.|||.|.|.|||||..||
RBAM_017230__ 1061 AAATCGAAGC-TTATTTGCGCCGGGAGCTGATGACGCCGTATGAAGTTCA 1109
BSNT_02799 1230 TGTGCCGGCAAGTGAAGGGAAGCTCCTTTCCAGAATCAAATCGGAAACGA 1279
||||||.||....|||||.||..|..|.||..|.||||||||.||.||.|
RBAM_017230__ 1110 TGTGCCTGCCGCCGAAGGCAAATTGATGTCACGCATCAAATCAGAGACCA 1159
BSNT_02799 1280 TGGTAGACCGCTTCTATTTTAATGAAGAAAATGAACAGTATGACATATCC 1329
||.|.|||.||.|.||||||||||||||||||||||..||.||..|.||.
RBAM_017230__ 1160 TGATCGACAGCCTTTATTTTAATGAAGAAAATGAACGCTACGAAGTCTCA 1209
BSNT_02799 1330 GGCTATGTCCAAGAAGAGCAAAGTATCATCGGTGAATTAAAGAAGTATAT 1379
||.|||||.||.|||||.|||||.||..||||.|||||.|||||.|..||
RBAM_017230__ 1210 GGTTATGTACAGGAAGAACAAAGCATACTCGGAGAATTGAAGAAATTCAT 1259
BSNT_02799 1380 GTAG 1383
|||.
RBAM_017230__ 1260 GTAA 1263
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