Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05964 and RBAM_018200

See Amino acid alignment / Visit BSNT_05964 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:28
# Commandline: needle
#    -asequence dna-align/BSNT_05964___yxjF.1.9828.seq
#    -bsequence dna-align/RBAM_018200___yxjF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05964___yxjF-RBAM_018200___yxjF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05964___yxjF-RBAM_018200___yxjF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05964___yxjF
# 2: RBAM_018200___yxjF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 809
# Identity:     584/809 (72.2%)
# Similarity:   584/809 (72.2%)
# Gaps:          58/809 ( 7.2%)
# Score: 2051.0
# 
#
#=======================================

BSNT_05964___      1 ----------------ATGAGAAAACAAGTCGCCTTGGTGACAGGGGCTG     34
                                     .|||.||||||    |||.|.||.|||||.||.|
RBAM_018200__      1 ATGCATTCATTGCTTATTGAAAAAACA----GCCGTTGTAACAGGTGCAG     46

BSNT_05964___     35 CCGGCGGAATCGGATTCGAAATGGCAAGAGAATTCGCCCGGGAAGGTGCC     84
                     |.||.||||||||..|||||||.||||.||||||||||||.|||||.| |
RBAM_018200__     47 CAGGAGGAATCGGGCTCGAAATCGCAAAAGAATTCGCCCGTGAAGGAG-C     95

BSNT_05964___     85 AG-CGTCATCGTTTCAGACCT--CCGTCCGGAAGCATGTGAAA-AAGCAG    130
                     || |||||||.|.||.||..|  .||..|  |||| .|.|||| ||||.|
RBAM_018200__     96 AGCCGTCATCATCTCTGATGTAAACGAAC--AAGC-GGGGAAAGAAGCGG    142

BSNT_05964___    131 CCTCCAAACTTGCAGAAGAAGGCTTTGACGC-GGCGGC----CATTCCGT    175
                     |..|.|||||..||||.|||||||.|||.|| |.|.||    |||.|   
RBAM_018200__    143 CGGCAAAACTGACAGATGAAGGCTGTGAAGCAGTCAGCATCACATGC---    189

BSNT_05964___    176 ATGATGTGACAAAGGAAGCGCAAGTTGCTGATACGGT---GAACGTCATC    222
                       |||||.|||||.|||..||||||.||.||.|.|.|   ||..|   ||
RBAM_018200__    190 --GATGTAACAAATGAAAAGCAAGTGGCCGACATGCTCCAGACGG---TC    234

BSNT_05964___    223 CAAAAACAATACGGCCGCTTGGATATTTTGGTGAACAATGCCGGTATTCA    272
                     .|.|||||||.|||.||..|.|||.|..|.|||||.|||||.||.|||||
RBAM_018200__    235 GAGAAACAATTCGGACGTCTCGATGTCCTTGTGAATAATGCGGGCATTCA    284

BSNT_05964___    273 GCACGTCGCTCCGATTGAAGAGTTTCCGACAGACAC-CTTTGAACAGCTG    321
                     |||.|||||.||.||.||.||.|||||.||.|| || .|||||||.|||.
RBAM_018200__    285 GCATGTCGCGCCCATCGAGGAATTTCCCACCGA-ACAGTTTGAACGGCTC    333

BSNT_05964___    322 A----TCAAGGTCATGCTGACGGCCCCCTTTATTGCAATGAAGCATGTTT    367
                     |    ||    ||||||||||.||.||.|||||.|||||||||||||..|
RBAM_018200__    334 ATTCGTC----TCATGCTGACTGCGCCATTTATCGCAATGAAGCATGCAT    379

BSNT_05964___    368 TTCCGATCATGAAAAAACAGCAGTTTGGCAGAATCATTAATATCGCGTCT    417
                     ||||.||.||||||||||||||.||.||..|||||||||||||.||||||
RBAM_018200__    380 TTCCCATTATGAAAAAACAGCAATTCGGTCGAATCATTAATATGGCGTCT    429

BSNT_05964___    418 GTTAATGGATTAGTCGGCTTTGCA-GGGAAATCCGCTTATAATAGCGCCA    466
                     ||.||.|||.|..|||| |||.|| ||||||.|.||.|||||.|||||||
RBAM_018200__    430 GTCAACGGACTGATCGG-TTTTCACGGGAAAGCGGCATATAACAGCGCCA    478

BSNT_05964___    467 AGCACGGCGTCATTGGACTCACAAAAGTAGGGGCGCTGGAAGGCGCGCCC    516
                     |||||||||||||.||..|.||.|||||.||.||.||.|||||||||.|.
RBAM_018200__    479 AGCACGGCGTCATCGGTTTAACGAAAGTCGGCGCACTTGAAGGCGCGGCT    528

BSNT_05964___    517 CACGGCATTACAGTCAATGCGCTCTGCCCGGGTTATGTCGATACCCAGCT    566
                     .||||||||||.|||||||||||.||.|||||.|||||.||.||.|||||
RBAM_018200__    529 GACGGCATTACCGTCAATGCGCTTTGTCCGGGATATGTGGACACTCAGCT    578

BSNT_05964___    567 TGTACGCAATCAGCTTAGCGATCTATCGAAAACTAGAAATGTCCCTTACG    616
                     |||.|||||||||.|.|..||..|.||...|||.||.|||||.||.||||
RBAM_018200__    579 TGTCCGCAATCAGTTAAAGGACATTTCCGCAACAAGGAATGTACCGTACG    628

BSNT_05964___    617 ACTCTGTACTTGAACAAGTCATTTTTCCGCTTGTGCCGCAAAAGCGACTG    666
                     |....||.|||||..|.|||||.||||||||.||.||.|||||.||.|||
RBAM_018200__    629 AACGGGTGCTTGAGGACGTCATCTTTCCGCTCGTTCCCCAAAAACGGCTG    678

BSNT_05964___    667 CTTTCCGTCAAGGAAATTGCGGATTATGCCGTGTTTTTGGCAAGCGAGAA    716
                     ||.||.||.||||||||.||.|||||.|||||.||||||||.|||||.||
RBAM_018200__    679 CTGTCAGTGAAGGAAATCGCTGATTACGCCGTATTTTTGGCCAGCGACAA    728

BSNT_05964___    717 GGCGAAGGGCGTCACTGGGCAGGCTGTCGTCCTTGATGGGGGCTACACCG    766
                     .||.||.||.|||||.||.|||||.||.|||.|.|||||.||.||.||||
RBAM_018200__    729 AGCAAAAGGGGTCACAGGTCAGGCCGTAGTCATGGATGGCGGGTATACCG    778

BSNT_05964___    767 CACAATGA-    774
                     |.|||| | 
RBAM_018200__    779 CTCAAT-AG    786


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05964 and RBAM_018200

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
