Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05964 and RBAM_018200

See DNA alignment / Visit BSNT_05964 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:28
# Commandline: needle
#    -asequence pep-align/BSNT_05964___yxjF.1.9828.seq
#    -bsequence pep-align/RBAM_018200___yxjF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05964___yxjF-RBAM_018200___yxjF.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05964___yxjF-RBAM_018200___yxjF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05964___yxjF
# 2: RBAM_018200___yxjF
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 261
# Identity:     200/261 (76.6%)
# Similarity:   232/261 (88.9%)
# Gaps:           4/261 ( 1.5%)
# Score: 1035.0
# 
#
#=======================================

BSNT_05964___      1 ----MRKQVALVTGAAGGIGFEMAREFAREGASVIVSDLRPEACEKAASK     46
                         :.::.|:|||||||||.|:|:|||||||:||:||:..:|.::||:|
RBAM_018200__      1 MHSLLIEKTAVVTGAAGGIGLEIAKEFAREGAAVIISDVNEQAGKEAAAK     50

BSNT_05964___     47 LAEEGFDAAAIPYDVTKEAQVADTVNVIQKQYGRLDILVNNAGIQHVAPI     96
                     |.:||.:|.:|..|||.|.||||.:..::||:||||:|||||||||||||
RBAM_018200__     51 LTDEGCEAVSITCDVTNEKQVADMLQTVEKQFGRLDVLVNNAGIQHVAPI    100

BSNT_05964___     97 EEFPTDTFEQLIKVMLTAPFIAMKHVFPIMKKQQFGRIINIASVNGLVGF    146
                     |||||:.||:||::|||||||||||.||||||||||||||:||||||:||
RBAM_018200__    101 EEFPTEQFERLIRLMLTAPFIAMKHAFPIMKKQQFGRIINMASVNGLIGF    150

BSNT_05964___    147 AGKSAYNSAKHGVIGLTKVGALEGAPHGITVNALCPGYVDTQLVRNQLSD    196
                     .||:|||||||||||||||||||||..|||||||||||||||||||||.|
RBAM_018200__    151 HGKAAYNSAKHGVIGLTKVGALEGAADGITVNALCPGYVDTQLVRNQLKD    200

BSNT_05964___    197 LSKTRNVPYDSVLEQVIFPLVPQKRLLSVKEIADYAVFLASEKAKGVTGQ    246
                     :|.||||||:.|||.||||||||||||||||||||||||||:||||||||
RBAM_018200__    201 ISATRNVPYERVLEDVIFPLVPQKRLLSVKEIADYAVFLASDKAKGVTGQ    250

BSNT_05964___    247 AVVLDGGYTAQ    257
                     |||:|||||||
RBAM_018200__    251 AVVMDGGYTAQ    261


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