Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04401 and RBAM_018270

See Amino acid alignment / Visit BSNT_04401 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:52
# Commandline: needle
#    -asequence dna-align/BSNT_04401.1.9828.seq
#    -bsequence dna-align/RBAM_018270___bioF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04401-RBAM_018270___bioF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04401-RBAM_018270___bioF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04401
# 2: RBAM_018270___bioF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1199
# Identity:     745/1199 (62.1%)
# Similarity:   745/1199 (62.1%)
# Gaps:         196/1199 (16.3%)
# Score: 2296.0
# 
#
#=======================================

BSNT_04401         1 ----------ATGAATGG----------GGCACCGGTTCCGG-----AGA     25
                               |.|.||||          |||.|  |.|.|||     |||
RBAM_018270__      1 GTGGATTTTGACGGATGGCTCCTCGGAAGGCTC--GATGCGGTGAAAAGA     48

BSNT_04401        26 G---------------------GAACATTG---ATGGC---GAAAATCAA     48
                     |                     |||||..|   |..||   .||||.|||
RBAM_018270__     49 GACGGGCTGTATCGGACGCTGCGAACACAGGAAACCGCTCTCAAAACCAA     98

BSNT_04401        49 ACGG-------------TCTGGTCCTCAAACAATTATTTAGGGCTCGCAA     85
                     |.||             .||||.|.||.||..|.||||||||.||..|||
RBAM_018270__     99 AGGGCAAAAGCGGCAGACCTGGGCGTCCAATGACTATTTAGGCCTGTCAA    148

BSNT_04401        86 GCGATAGA-CGTTTGATCGATGCAGCCCAAACAGCATTGCAGCAATTTGG    134
                     ..||| || ||..|||||...||.||.|||||.||..|| |||...||.|
RBAM_018270__    149 AAGAT-GAGCGGCTGATCACAGCCGCGCAAACGGCGATG-AGCCGGTTCG    196

BSNT_04401       135 GA-CAGGAAGTAGCGGTTCACGTTTAACGACAGGCAATTCGGTCTGGCAT    183
                     || |.|||||..||||.|||||.|||||||||||.|||.|.||.|||||.
RBAM_018270__    197 GAGCGGGAAGCGGCGGCTCACGGTTAACGACAGGAAATACTGTGTGGCAC    246

BSNT_04401       184 GAAAAGCTAGAAAAGAAGATTGCCAGCTTTAAGCGGACAGAAGCGGCCCT    233
                     |||||.||.|||.|.|..||.||....|||||.|.|||.||||||||..|
RBAM_018270__    247 GAAAAACTTGAACACACAATCGCGGATTTTAAACAGACGGAAGCGGCTTT    296

BSNT_04401       234 GCTGTTTTCGAGCGGTTACTTGGCCAATGTCGGTGTCCTTTCATCCTTGC    283
                     ..|||||||.||||||||||||||.|||.||||.||.|||.|.||..|||
RBAM_018270__    297 ATTGTTTTCAAGCGGTTACTTGGCAAATATCGGCGTGCTTGCCTCACTGC    346

BSNT_04401       284 CAGAAAAGGAAGATGTCATTTTAAGTGACCAGCTCAATCATGCAAGTATT    333
                     |..||||.|..||||||||||||||.||.||.||.||.|||||.||.|||
RBAM_018270__    347 CTCAAAAAGGCGATGTCATTTTAAGCGATCAACTGAACCATGCGAGCATT    396

BSNT_04401       334 ATCGACGGCTGCCGACTTTCTAAGGCTGATACAGTTGTTTATCGGCATAT    383
                     .|.|||||||||||..|.||.||.||.||.||..|.||.||.||.|||||
RBAM_018270__    397 GTTGACGGCTGCCGTTTATCAAAAGCGGAAACCATCGTGTACCGCCATAT    446

BSNT_04401       384 TGATATGAATGATCTTGAAAACAAGCTGAATGAAACACAGCGTTATCAG-    432
                     |||||||..|||||||||.||.||.||   ||    .|..|||  .||| 
RBAM_018270__    447 TGATATGGCTGATCTTGAGAAAAAACT---TG----CCTCCGT--CCAGG    487

BSNT_04401       433 --------CGCCGTTTTATCGTAACAGACGGGGTATTCAGCATGGATGGC    474
                             |||||.||.|||||.||||||||.||.|||||||||||.|||
RBAM_018270__    488 CTCGGAACCGCCGCTTCATCGTCACAGACGGCGTCTTCAGCATGGACGGC    537

BSNT_04401       475 ACAATCGTCCCTCTTGATCAGATCATCTCACTTGCGAAACGCTATCATGC    524
                     ||.||||..||||||||.|..||.||..|.|||||.||.|..||.||.||
RBAM_018270__    538 ACCATCGCGCCTCTTGACCGCATAATGGCGCTTGCAAAGCAGTACCAGGC    587

BSNT_04401       525 CTTCGTGGTCGTTGATGACGCCCACGCAACAGGAGTTTTAGGTGATTCGG    574
                     .||.|||.|.|..||||||||.||.|||||.||.||        |.||||
RBAM_018270__    588 ATTTGTGATAGCAGATGACGCGCATGCAACCGGTGT--------ACTCGG    629

BSNT_04401       575 G----AC----GAGGAACGAGTGAATACTTTGGTGTTTATCCTGACATTG    616
                     |    ||    |.|||||.|||||.||.||.|||||||.||||||..|||
RBAM_018270__    630 GGAAAACGGCGGGGGAACCAGTGACTATTTCGGTGTTTGTCCTGATGTTG    679

BSNT_04401       617 TGATCGGCACCTTAAGCAAAGCTGTTGGTACGGAAGGAGGTTTTGCGGCT    666
                     |.||||||||.||||||||||||||.||.||||||||.||||||||.||.
RBAM_018270__    680 TCATCGGCACATTAAGCAAAGCTGTAGGAACGGAAGGCGGTTTTGCCGCG    729

BSNT_04401       667 GGATCAGCGGTCTTCATCGACTTTTTGCTGAACCATGCCAGAACATTTAT    716
                     ||||||....|.|||||.||.|||||||||||.||.||..|.||.|||||
RBAM_018270__    730 GGATCAAACATTTTCATTGATTTTTTGCTGAATCAGGCGCGGACGTTTAT    779

BSNT_04401       717 CTTTCAAACCGCTATTCCGCCAGCCAGCTGTGCGGCTGCTCACGAGGCTT    766
                     .|||||.||.||..|.|||||..|.|..|||||||||.|.||...|||.|
RBAM_018270__    780 TTTTCAGACGGCCCTCCCGCCGTCAATTTGTGCGGCTTCGCATACGGCAT    829

BSNT_04401       767 TCAACATCAGAAC----------------------------CAGT-----    783
                     |..||||||.|.|                            ||||     
RBAM_018270__    830 TTGACATCATATCAGATATGCACGATACGCGCCGTGAGCTGCAGTCGTCT    879

BSNT_04401       784 ---------TTGAAGA------------ATATGGGTTATGTGGTGAAA--    810
                              .|.||.|            |||||||.|.|...||.|.|  
RBAM_018270__    880 GTCAAAATGATAAAAACGCGTCTGGCCGATATGGGCTTTACCGTAAGAGG    929

BSNT_04401       811 -GGAGATCACACACCGATTATTCCTGTAGTCATTGGCGATGCCCATAAAA    859
                      ||||||   |||||||||||.||.||..||||.||.|||||    ||||
RBAM_018270__    930 CGGAGAT---ACACCGATTATCCCCGTTATCATCGGTGATGC----AAAA    972

BSNT_04401       860 ----CGGTCATATTT-----GCTGAAAAACTGCAGGGCAAGGGAATTTAT    900
                         |||     |||     ||||.|...|||.||...||||||||.|..
RBAM_018270__    973 ACAGCGG-----TTTCAGCCGCTGCACTGCTGGAGAAAAAGGGAATCTGC   1017

BSNT_04401       901 GCTCCTGCCATTCGGCCGCCGACCGTTGCGCCGGGTGAAAGCCGTATTCG    950
                     ||.||.|||||.||.|||||..|||||.||...||.||||||.|.||..|
RBAM_018270__   1018 GCCCCGGCCATCCGCCCGCCCGCCGTTCCGGAAGGCGAAAGCAGAATCAG   1067

BSNT_04401       951 AATTACAATCACGTCTGACCACAG--TATGGGTGATATTGATGATTTGCT    998
                     ..|.||..|.|||.|.||.|.|||  ||..|  |||||.||.||   |||
RBAM_018270__   1068 GCTGACCGTTACGGCGGATCGCAGCTTACAG--GATATAGACGA---GCT   1112

BSNT_04401       999 GA---AAACATTTCATTCAATCGGAAAGGAGCTGCATAT---CATTTGA   1041
                     ||   ||.|||||.||||.||..||||.||||||.||||   ||..|||
RBAM_018270__   1113 GACAGAAGCATTTGATTCCATTAGAAAAGAGCTGAATATAAACAAATGA   1161


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