Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04050 and RBAM_024930
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:24
# Commandline: needle
# -asequence dna-align/BSNT_04050___nifS.1.9828.seq
# -bsequence dna-align/RBAM_024930___nifS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04050___nifS-RBAM_024930___nifS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04050___nifS-RBAM_024930___nifS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04050___nifS
# 2: RBAM_024930___nifS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1277
# Identity: 805/1277 (63.0%)
# Similarity: 805/1277 (63.0%)
# Gaps: 199/1277 (15.6%)
# Score: 2606.0
#
#
#=======================================
BSNT_04050___ 1 ATGGAGGAAGACCGGATGATTTATTTAGATTATGCAGCGACAACGCCTAT 50
|||||||||.|.|||||.||.|||..|.|||||.|
RBAM_024930__ 1 ---------------ATGATTTATCTTGATTACGCGGCGGGAGCGCCTTT 35
BSNT_04050___ 51 TTGTGAGGAAGCCCTTACTGTATATCAGAAGCTTAGTATGGATATGTACG 100
..|..|.||||||...|..||.|.||||.|.||.||.|..||..|.||||
RBAM_024930__ 36 AAGCAAAGAAGCCGCGAAAGTCTTTCAGCATCTCAGCACAGAGGTATACG 85
BSNT_04050___ 101 GAAATGCCAGCAGCCTGCATGATGCAGGAGGAAAAGCAAAGCACATACTG 150
|.|||||.||||||||.|||||.||.|||||||.|||...|.||.|.|||
RBAM_024930__ 86 GCAATGCAAGCAGCCTTCATGACGCCGGAGGAAGAGCGGCGGACGTGCTG 135
BSNT_04050___ 151 GAGTACTGCCGTGAAAAAATC----GCCAACATCATTGGCGGAGAAGCAA 196
||.||.||| |.|.|.|| |.|||..|.||.|||||||..|||.
RBAM_024930__ 136 GAATATTGC----AGACATTCTGCAGGCAAATTGATCGGCGGAGCGGCAG 181
BSNT_04050___ 197 GCGGCATCTATTTTACAAGCGGCGGCACTGAATCCAATTTTCTGGCCATT 246
.||||||.||.||||||||||||||.||.|||.|.||..|.||||||.|.
RBAM_024930__ 182 ACGGCATTTACTTTACAAGCGGCGGAACGGAAGCGAACATCCTGGCCGTC 231
BSNT_04050___ 247 CAATCATTGCTAAACGGCCTGCCAAAAACG-----AAAAGACATTTTATT 291
|||||||||||..|.||.||||| || ||||.||||||||||
RBAM_024930__ 232 CAATCATTGCTGCAGGGTCTGCC-----CGATCACAAAAAACATTTTATT 276
BSNT_04050___ 292 ATGACTGCCATGGAGCATCAGTCCATTCATAATTGCGCTGCTTTTTTGGA 341
|.|||.||.|||||.||.||.||.||.||||||..|||.||.|||||
RBAM_024930__ 277 ACGACCGCAATGGAACACCATTCGATCCATAATGCCGCGGCGTTTTT--- 323
BSNT_04050___ 342 ACAGCAG-----GGATATGATGTAACAGTCATTGAACCGAATGAATACGG 386
|||.| |||..||||||.||..||||..|.||..|.|||.||||
RBAM_024930__ 324 --AGCTGACCGTGGAATTGATGTCACCATCATATATCCCGACGAAAACGG 371
BSNT_04050___ 387 GCTTATTACCGAGGAAATATTACTAGCCCATATCCGGCCGGAAACAGGCC 436
.|||||.||||||||.|||.|....||.||||||||.||.||.||.||.|
RBAM_024930__ 372 CCTTATAACCGAGGACATACTGGCGGCTCATATCCGTCCTGACACGGGGC 421
BSNT_04050___ 437 TTGTATCTATTCAGCATGCAAATTCTGAAACCGGGATCATTCAGCCCATT 486
|.||.||.||.|||||.||.|||||.||||||||..||||.|||||..|.
RBAM_024930__ 422 TCGTTTCCATACAGCACGCGAATTCAGAAACCGGCCTCATCCAGCCTGTG 471
BSNT_04050___ 487 CAACGCCTG--------TCTTCATACCTGCACAATAAGGGGATTCTTCTT 528
.|.||.||| |||||| .||.|..|| .|||.|.||.
RBAM_024930__ 472 AATCGTCTGGCCGCTTTTCTTCA-----CCAGAGAAA---CATTTTGCTG 513
BSNT_04050___ 529 CATTGCGACGCTGTTCAAACGTTT--GGAAA---------GATCCCGATC 567
||||||||...|||||||| |||| |.||| |||.|.||||
RBAM_024930__ 514 CATTGCGATTGTGTTCAAA-GTTTCGGCAAACTGCCGATTGATGCGGATC 562
BSNT_04050___ 568 AATACAAAAAATCTGGGAGTAGATGCACTCTCAATGTCCAGCCATAAAAT 617
|..| ||||.|.||.||.||.||..|.|||.|.||||||.|
RBAM_024930__ 563 AGGA----------GGGAATCGACGCCCTTTCCGTCTCCGGTCATAAAGT 602
BSNT_04050___ 618 CCACGGTCCAAAAGGAGTAGGGGCGGTCTATATCCGGCCGGATGTCCCTT 667
..||||.||.|||||....|||||.||.||.||.|||||.|.||||...|
RBAM_024930__ 603 ATACGGCCCGAAAGGCACCGGGGCTGTTTACATTCGGCCCGGTGTCAGCT 652
BSNT_04050___ 668 GGAAACCCGTTTATCATCTGACTACTCACGAATACGGATTCAGAGCCGGC 717
||||.||.|||||||..|..||....||.|||.||||.|||||..||||.
RBAM_024930__ 653 GGAACCCGGTTTATCCGCATACCGTGCATGAAAACGGGTTCAGGCCCGGT 702
BSNT_04050___ 718 ACCGTAAATGTTCCCGGGATCGGTGCCTTCACTGCCGCTGCAGAATTGAT 767
||.||.|||||.||.|..|||||.||.||.||.||.|||||.||
RBAM_024930__ 703 ACGGTGAATGTGCCGGCCATCGGCGCTTTTACCGCTGCTGCGGA------ 746
BSNT_04050___ 768 CGTA---AGCGAA----ATGGAAAAACAGATATCCCGCAA---------- 800
||| ||.||| |||||..|||| |||..|
RBAM_024930__ 747 -GTATGCAGTGAAACATATGGAGGAACA------CCGTGAGCATGCTGAC 789
BSNT_04050___ 801 ----TGAGGCATTAAGAACATACTTTCTA-GACCAAATCCGTATTC--GG 843
|||||.|||| |||.|| ||||||||.||...|| ||
RBAM_024930__ 790 AGGCTGAGGAATTA---------TTTGTATGACCAAATTCGGCGTCAAGG 830
BSNT_04050___ 844 TCTCTCCCTGTAACCCTTGCAGCAGACACTTCGAAA-----GCAGAATGT 888
.|||.||.|.| |..||.|||..|| .|||| |..|||||.
RBAM_024930__ 831 CCTCCCCATTT--CATTTTCAGAGGA-----AGAAACCGGCGGTGAATGC 873
BSNT_04050___ 889 CTTCCGCATATTATAGGGTGTTTTTTTCACTCATTTGAAGGACAATATGT 938
||.||.||.|||.|.|||||||||||||||||.|||||||||||||||.|
RBAM_024930__ 874 CTGCCCCACATTGTCGGGTGTTTTTTTCACTCCTTTGAAGGACAATATAT 923
BSNT_04050___ 939 TATGTTAGAATGTAATCGGAGTAATATTTGCATTTCAACCGGCAGCGCTT 988
||||||||||||||||||.|...||||||||||.||||||||.|||||.|
RBAM_024930__ 924 TATGTTAGAATGTAATCGTAACGATATTTGCATCTCAACCGGGAGCGCAT 973
BSNT_04050___ 989 GTTCTGCAGGTTACCACGGTCCGTCTGAAACAATGAAAGCATTAAGAAAA 1038
||||.||.||...||||||.||.|||..|.|.|||||.||..|.||||||
RBAM_024930__ 974 GTTCCGCCGGCAGCCACGGCCCTTCTTCAGCTATGAAGGCGCTGAGAAAA 1023
BSNT_04050___ 1039 ACCGAACAAGAAGCTCTGCAATTTATCCGCATCTCTTTTGGCAGGCATAC 1088
|||||||..|||||.|.|||.|||.||||.|||||.||.||.|...|.||
RBAM_024930__ 1024 ACCGAACGGGAAGCGCGGCAGTTTTTCCGGATCTCATTCGGAAACGAAAC 1073
BSNT_04050___ 1089 AACAGCTGAACAGCTGGAACAGTTAT-----TACATACGTTTACAGTGCT 1133
||||..|||||||||.|| ||| |||||||.|||||.|.|||
RBAM_024930__ 1074 AACATGTGAACAGCTCGA-----TATGCTGATACATACATTTACGGCGCT 1118
BSNT_04050___ 1134 TTGGGAACAAAAGAAAGGA-------GAATTTGATATTGACCGAAGAATT 1176
.|||||.|||||||||||| ||||||||
RBAM_024930__ 1119 ATGGGAGCAAAAGAAAGGAGAATCAGGAATTTGA---------------- 1152
BSNT_04050___ 1177 AAAGCTAATGGGCGCCAACAGGCGTGA 1203
RBAM_024930__ 1152 --------------------------- 1152
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