Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04077 and RBAM_025120

See Amino acid alignment / Visit BSNT_04077 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:25
# Commandline: needle
#    -asequence dna-align/BSNT_04077.1.9828.seq
#    -bsequence dna-align/RBAM_025120___comC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04077-RBAM_025120___comC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04077-RBAM_025120___comC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04077
# 2: RBAM_025120___comC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 805
# Identity:     379/805 (47.1%)
# Similarity:   379/805 (47.1%)
# Gaps:         320/805 (39.8%)
# Score: 1093.0
# 
#
#=======================================

BSNT_04077         0 --------------------------------------------------      0
                                                                       
RBAM_025120__      1 GTGCTTTTGATTCTGTTTTTTCTAGGCTTGATTTTCGGTTCTTTTTTTTA     50

BSNT_04077         0 --------------------------------------------------      0
                                                                       
RBAM_025120__     51 TACAGCAGCGTGCCGTATCCCGCTGCGAATCTCGGTTATTTCGCCGCGTT    100

BSNT_04077         0 --------------------------------------------------      0
                                                                       
RBAM_025120__    101 CAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCC    150

BSNT_04077         0 --------------------------------------------------      0
                                                                       
RBAM_025120__    151 GTCGTTTCCTATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAA    200

BSNT_04077         1 ----------ATGTATCCCGCAGCAGA--GCTTGTGACAGCGTGTTTATT     38
                               ||||||||.||.||.||  |||  .|||.||.||||||||
RBAM_025120__    201 GCTGTCGGTTATGTATCCGGCGGCGGAATGCT--GGACGGCATGTTTATT    248

BSNT_04077        39 TGCCGCCGCAGGAATACGCTTTGGCACGTCGCT----GGAACTGTT--TC     82
                     ..|.||.|||||.||.|..||.|    ||..||    .||||||||  ||
RBAM_025120__    249 CACGGCTGCAGGCATTCATTTCG----GTTTCTCAAAAGAACTGTTAGTC    294

BSNT_04077        83 CCGCTGTGGTGTTTATCTCTCTTCTCATTATTGTTGCAGTGACAGATATT    132
                     .||||||  |.|||.|.|||||.|||||.||||||.|..||||.|||.|.
RBAM_025120__    295 GCGCTGT--TATTTCTGTCTCTGCTCATGATTGTTACTATGACGGATCTG    342

BSNT_04077       133 CATTTTATGCTGATTC----CAAA--TCGTATATTGATTTTCTTTCTTCC    176
                     ||.|.|||||||||||    ||||  ||      ||.|.||.||||||||
RBAM_025120__    343 CAATATATGCTGATTCCTGACAAAGTTC------TGCTGTTTTTTCTTCC    386

BSNT_04077       177 -CTTTTTGGCGGCCGCGAGATTGATTTCTCCGCTTGATTCCTGGTATGCA    225
                      |||||...| ||||.|.|..||.||||||||||.|||||.|||||||||
RBAM_025120__    387 GCTTTTCATC-GCCGGGCGTATGTTTTCTCCGCTGGATTCATGGTATGCA    435

BSNT_04077       226 GGCCTGTTAGGTGCGGCAGC------CGGATTTCTATTTCTGGCTGTAAT    269
                     ||   |||   |||.|.|||      |||||||   ||||||..|||..|
RBAM_025120__    436 GG---GTT---TGCCGGAGCCGTTTGCGGATTT---TTTCTGCTTGTTTT    476

BSNT_04077       270 TGCCGCAATCACCCAT-------------GGGGGAGTAGGGGGAGGAGAT    306
                     |      ||    |||             ||.||..|.||.|.|||.|||
RBAM_025120__    477 T------AT----CATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGAT    516

BSNT_04077       307 ATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAA-----TG    351
                     .|.|||.|.||||.||||||.|||.|...|||.||.||  |||     ||
RBAM_025120__    517 GTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGT--AAAGCTCGTG    564

BSNT_04077       352 CTGGCAGCTGCCTT-TTTCTTTTCTGTTTTGATAGGTGCATTATATG---    397
                     ||  || .|||.|| |||| ||||.|||.||||.||.||..||||.|   
RBAM_025120__    565 CT--CA-TTGCATTCTTTC-TTTCCGTTATGATCGGAGCCGTATACGGTA    610

BSNT_04077       398 ---GAGCGGCAGCCGTTCTGACTGGTAGACTCGCTAAAAGGCAGCCGCTT    444
                        |.||.||||||   |.|   ||.||.||.|.|||||.||||||..||
RBAM_025120__    611 TGTGCGCCGCAGCC---CGG---GGCAGGCTTGGTAAAAAGCAGCCATTT    654

BSNT_04077       445 CCCTTTGCCCCCGCTATAGCCGCAGGGAGC-ATTTTAGCCTATTTATACG    493
                     ||.|||||.||.||.||..|.||.|||||| .|||.|| .||||||||||
RBAM_025120__    655 CCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAG-TTATTTATACG    703

BSNT_04077       494 GTGA----CTCTATCATTTCTTTTTATATCAAAATGGCATT------GGG    533
                     ||||    ||.|    ||||.|||||.|||||..|.|| ||      |||
RBAM_025120__    704 GTGAAGAGCTGT----TTTCGTTTTACATCAAGCTCGC-TTCAGGAGGGG    748

BSNT_04077       534 C-TGA    537
                     | |||
RBAM_025120__    749 CTTGA    753


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