Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04098 and RBAM_025260

See Amino acid alignment / Visit BSNT_04098 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:28
# Commandline: needle
#    -asequence dna-align/BSNT_04098___lonA.1.9828.seq
#    -bsequence dna-align/RBAM_025260___lonA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04098___lonA-RBAM_025260___lonA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04098___lonA-RBAM_025260___lonA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04098___lonA
# 2: RBAM_025260___lonA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2332
# Identity:    1900/2332 (81.5%)
# Similarity:  1900/2332 (81.5%)
# Gaps:          14/2332 ( 0.6%)
# Score: 7764.0
# 
#
#=======================================

BSNT_04098___      1 ATGGCAGAAGAATTAAAACGCAGCATCCCGCTCCTCCCTTTAAGAGGTTT     50
                     |||||||||||...|||||||||||||||||||||||||||||||||.||
RBAM_025260__      1 ATGGCAGAAGATACAAAACGCAGCATCCCGCTCCTCCCTTTAAGAGGCTT     50

BSNT_04098___     51 ATTAGTGTACCCGACGATGGTTTTGCATTTAGATGTAGGACGTGACAAGT    100
                     |||.||.||||||||.||||||||.||||||||||||||.||||||||||
RBAM_025260__     51 ATTGGTATACCCGACAATGGTTTTACATTTAGATGTAGGCCGTGACAAGT    100

BSNT_04098___    101 CGGTTCAGGCTCTTGAACAGGCAATGATGCATGATCATATGATATTTTTA    150
                     |||||||||||||||||||||||||||||||||||||||||||.||||||
RBAM_025260__    101 CGGTTCAGGCTCTTGAACAGGCAATGATGCATGATCATATGATTTTTTTA    150

BSNT_04098___    151 GCCACTCAGCAGGATATTTCGATAGACGAACCTGGTGAAGACGAGATTTT    200
                     ||||||||||||||||||||||||||||||||.||||||||.||.|||||
RBAM_025260__    151 GCCACTCAGCAGGATATTTCGATAGACGAACCGGGTGAAGAGGATATTTT    200

BSNT_04098___    201 CACTGTCGGCACCTATACAAAAATTAAGCAAATGCTGAAGCTTCCGAACG    250
                     |.|.||||||||.||||||||||||||.||.|||||||||||.||.||||
RBAM_025260__    201 CGCCGTCGGCACTTATACAAAAATTAAACAGATGCTGAAGCTGCCCAACG    250

BSNT_04098___    251 GTACGATTCGTGTGTTGGTGGAGGGCCTCAAACGCGCCCAGATCGTCAAA    300
                     |||||||..|.|||.|.||.||.||..|..|.||.||.||||||.|..||
RBAM_025260__    251 GTACGATCAGAGTGCTTGTAGAAGGAATTCAGCGGGCGCAGATCCTTGAA    300

BSNT_04098___    301 TACAATGAACACGAGGATTACACGTCGGTCGACATTCAACTTATTCATGA    350
                     ||||..||.|.|||.|||||.||.||||||||.||.||.||.||.|||||
RBAM_025260__    301 TACACCGAGCTCGAAGATTATACTTCGGTCGATATACAGCTGATGCATGA    350

BSNT_04098___    351 AGATGATTCAAAAGATACAGAAGACGAAGCATTGATGCGGACTTTGCTAG    400
                     .||||||||||||||....|||||||||||..|.||||||||..||||.|
RBAM_025260__    351 GGATGATTCAAAAGACGTGGAAGACGAAGCGCTTATGCGGACGCTGCTGG    400

BSNT_04098___    401 ACCACTTTGATCAGTACATAAAAATTTCTAAAAAAATCTCGGCCGAAACG    450
                     ||||.|||||.|||||||||||||||||||||||||||||.||.||||||
RBAM_025260__    401 ACCATTTTGACCAGTACATAAAAATTTCTAAAAAAATCTCCGCAGAAACG    450

BSNT_04098___    451 TACGCCGCGGTTACTGATATCGAAGAGCCGGGGAGAATGGCAGACATCGT    500
                     ||.||.||.||.||||||||.||||||||.||.||||||||.||.|||||
RBAM_025260__    451 TATGCGGCTGTGACTGATATTGAAGAGCCCGGCAGAATGGCGGATATCGT    500

BSNT_04098___    501 TGCTTCTCATCTGCCCCTTAAACTAAAGGATAAGCAGGATATTTTAGAAA    550
                     ||||||||||||.||.||.|||.|||||||.||||||||.||||||||||
RBAM_025260__    501 TGCTTCTCATCTCCCGCTGAAATTAAAGGACAAGCAGGACATTTTAGAAA    550

BSNT_04098___    551 CGGCTGATGTCAAAGACAGGCTGAACAAGGTCATTGATTTTATTAATAAT    600
                     ||||.|||.|.|||||..|.|||||.||||||||...||..|||.|||||
RBAM_025260__    551 CGGCGGATATTAAAGAACGTCTGAATAAGGTCATCCGTTCCATTCATAAT    600

BSNT_04098___    601 GAAAAAGAAGTGCTGGAGATTGAGAAAAAAATCGGCCAGCGCGTCAAACG    650
                     |||||||||||||||||||||||||||||||||||.||||||||||||||
RBAM_025260__    601 GAAAAAGAAGTGCTGGAGATTGAGAAAAAAATCGGTCAGCGCGTCAAACG    650

BSNT_04098___    651 TTCGATGGAGCGTACGCAGAAGGAATACTACTTGCGAGAACAAATGAAGG    700
                     |||||||||.||.||.||.|||||||||||||||||.|||||.|||||.|
RBAM_025260__    651 TTCGATGGAACGCACTCAAAAGGAATACTACTTGCGTGAACAGATGAAAG    700

BSNT_04098___    701 CGATTCAAAAAGAGCTTGGCGATAAAGAAGGCAAAACTGGCGAAGTTCAG    750
                     |.|||||.||.|||||||||||.||||||||.|||||.||||||||||||
RBAM_025260__    701 CCATTCAGAAGGAGCTTGGCGACAAAGAAGGAAAAACCGGCGAAGTTCAG    750

BSNT_04098___    751 ACGCTGACGGAAAAAATCGAAGAAGCAGGCATGCCTGATCATGTGAAGGA    800
                     .||||.||||||||.||.||||||||||||||||||||.|.|||.||.||
RBAM_025260__    751 TCGCTCACGGAAAAGATAGAAGAAGCAGGCATGCCTGAGCGTGTCAAAGA    800

BSNT_04098___    801 AACAGCGCTTAAAGAATTGAACAGATATGAAAAAATTCCGTCAAGTTCTG    850
                     |||.||||||||.|||||.|.|.|.||.||||||.|.||||||||.||.|
RBAM_025260__    801 AACGGCGCTTAAGGAATTAAGCCGTTACGAAAAAGTGCCGTCAAGCTCAG    850

BSNT_04098___    851 CGGAAAGCTCCGTGATCCGCAACTATATCGACTGGCTGGTTGCTCTTCCG    900
                     ||||||||||.||.||||||||||||||.||||||||..|.||.||||||
RBAM_025260__    851 CGGAAAGCTCTGTTATCCGCAACTATATTGACTGGCTCATCGCCCTTCCG    900

BSNT_04098___    901 TGGACGGATGAAACAGATGATAAGCTTGATTTGAAAGAAGCAGG----AC    946
                     |||.|||||||||||||.|||||.||||||.|.|||.||||.||    | 
RBAM_025260__    901 TGGTCGGATGAAACAGAAGATAAACTTGATATTAAAAAAGCCGGGGAAA-    949

BSNT_04098___    947 GTCTCTTGGACGAAGAGCACCACGGGCTAGAAAAAGTAAAAGAACGTATT    996
                        ||||.||..|||||||||||||..||||.|||||.|||||.||.|||
RBAM_025260__    950 ---TCTTAGATAAAGAGCACCACGGCTTAGAGAAAGTGAAAGAGCGGATT    996

BSNT_04098___    997 TTAGAATATTTGGCTGTCCAGAAGCTGACCAAATCCCTGAAAGGCCCGAT   1046
                     ||.||.||||||||.||..|..|||||||.|||.|.||||||||.|||||
RBAM_025260__    997 TTGGAGTATTTGGCCGTGAAACAGCTGACGAAAACGCTGAAAGGGCCGAT   1046

BSNT_04098___   1047 TCTCTGTTTGGCAGGACCTCCAGGTGTCGGAAAAACGTCTTTAGCCAAAT   1096
                     |||.|||.||||.||||||||.||.|||||.|||||.|||.|.||.||||
RBAM_025260__   1047 TCTTTGTCTGGCCGGACCTCCGGGAGTCGGTAAAACATCTCTTGCAAAAT   1096

BSNT_04098___   1097 CAATTGCA--AAAAGCTTGGGACGCAAATTCGTCAGAATCTCACTCGGAG   1144
                     ||||  ||  |..|||.||||.|||...||.||.|||||.|||||.||.|
RBAM_025260__   1097 CAAT--CAGTACGAGCATGGGGCGCCGTTTTGTGAGAATTTCACTGGGCG   1144

BSNT_04098___   1145 GAGTACGGGACGAATCAGAGATACGCGGACACAGACGGACCTATGTCGGA   1194
                     ||||.||.||.||.||.||.||.|||||.|||.|.||.||.||.||||||
RBAM_025260__   1145 GAGTGCGCGATGAGTCTGAAATCCGCGGGCACCGGCGTACATACGTCGGA   1194

BSNT_04098___   1195 GCAATGCCTGGACGTATTATTCAAGGGATGAAAAAAGCGGGCAAGCTGAA   1244
                     ||.||||||||.||||||||.||.||||||||||||||.|||||.|..||
RBAM_025260__   1195 GCGATGCCTGGCCGTATTATACAGGGGATGAAAAAAGCCGGCAAACAAAA   1244

BSNT_04098___   1245 TCCGGTCTTCTTATTAGACGAAATTGACAAAATGTCATCTGATTTTAGAG   1294
                     ||||||.||..|..|.||.||.||.||.||||||||.||||||||.||||
RBAM_025260__   1245 TCCGGTTTTTCTCCTGGATGAGATCGATAAAATGTCGTCTGATTTCAGAG   1294

BSNT_04098___   1295 GAGACCCATCATCCGCTATGCTTGAAGTGCTTGATCCAGAGCAAAACAGC   1344
                     |.||.||.||.||.||.||||||||.|||||.|||||.||.|||||||||
RBAM_025260__   1295 GCGATCCGTCTTCAGCGATGCTTGAGGTGCTGGATCCGGAACAAAACAGC   1344

BSNT_04098___   1345 AGCTTCAGTGATCACTATATTGAAGAAACCTTTGATTTATCCAAAGTGCT   1394
                     |..|||||.||.||||||||||||||.||.||.||||||||.||||||||
RBAM_025260__   1345 ACATTCAGCGACCACTATATTGAAGAGACATTCGATTTATCGAAAGTGCT   1394

BSNT_04098___   1395 GTTTATCGCAACGGCAAACAATTTGGCCACAATCCCGGGCCCGCTCAGAG   1444
                     |||||||||.||.||.||.||..|.||..|.||.|||||.||.|||||||
RBAM_025260__   1395 GTTTATCGCGACTGCGAATAACCTTGCTTCCATACCGGGACCTCTCAGAG   1444

BSNT_04098___   1445 ACAGAATGGAAATTATTAATATCGCAGGCTACACAGAAATAGAAAAACTT   1494
                     ||||||||||.|||||.|...|..||||||||||.||||..|||||.||.
RBAM_025260__   1445 ACAGAATGGAGATTATCAGCCTGTCAGGCTACACTGAAAACGAAAAGCTG   1494

BSNT_04098___   1495 GAAATCGTAAAGGATCACTTGCTTCCAAAGCAAATCAAAGAACACGGGCT   1544
                     ||.|||||.|||||.|||.|||||||.||.|||||||||||.||||||||
RBAM_025260__   1495 GAGATCGTGAAGGACCACCTGCTTCCGAAACAAATCAAAGAGCACGGGCT   1544

BSNT_04098___   1545 GAAGAAAAGCAACCTGCAGCTGCGTGATCAGGCGATTCTTGATATTATCC   1594
                     .|..||.||||||||||||.|.||.||||||||||||...||.||.||||
RBAM_025260__   1545 CACAAAGAGCAACCTGCAGATTCGGGATCAGGCGATTACGGACATCATCC   1594

BSNT_04098___   1595 GCTACTATACGAGAGAAGCTGGTGTGAGAAGCCTTGAACGCCAGCTTGCC   1644
                     |||||||.|||||.|||||.||.|||||||..||||||||||||.|||||
RBAM_025260__   1595 GCTACTACACGAGGGAAGCCGGCGTGAGAACGCTTGAACGCCAGATTGCC   1644

BSNT_04098___   1645 GCGATTTGCCGTAAAGCTGCAAAAGCCATTGTTGCTGAAGAGCGAAAACG   1694
                     ||.||||||||.||.|||||||||||||||||..||||.|||.|||||||
RBAM_025260__   1645 GCCATTTGCCGAAAGGCTGCAAAAGCCATTGTGTCTGAGGAGAGAAAACG   1694

BSNT_04098___   1695 GATTACGGTTACTGAGAAGAACCTTCAAGACTTTATCGGAAAACGTATTT   1744
                     .|||||.|||||.|||||.||.||....||||.|.||||||||||.||.|
RBAM_025260__   1695 CATTACCGTTACAGAGAAAAATCTGGCCGACTATCTCGGAAAACGGATAT   1744

BSNT_04098___   1745 TCAGATATGGACAAGCTGAAACAGAGGATCAGGTTGGTGTAGTGACAGGG   1794
                     |||||||.|||||.||.|||||.||.|||||..|.||.||.||.||.|||
RBAM_025260__   1745 TCAGATACGGACAGGCGGAAACCGAAGATCAAATCGGGGTTGTCACGGGG   1794

BSNT_04098___   1795 CTTGCTTATACAACCGTTGGCGGAGATACGCTGTCGATTGAAGTATCGCT   1844
                     ||.||.|||||.||.||.|||||||||||||||||.||.|||||.||..|
RBAM_025260__   1795 CTCGCGTATACGACGGTCGGCGGAGATACGCTGTCAATCGAAGTGTCATT   1844

BSNT_04098___   1845 TTCTCCGGGGAAAGGGAAATTAATCCTGACAGGAAAGCTCGGAGATGTTA   1894
                     .||.|||||.|||||.||..|.||.|||||.||.|||||.||||||||.|
RBAM_025260__   1845 GTCACCGGGAAAAGGAAAGCTGATTCTGACCGGGAAGCTTGGAGATGTCA   1894

BSNT_04098___   1895 TGAGAGAGTCAGCTCAGGCTGCATTCAGCTATGTGCGATCCAAAACAGAA   1944
                     ||.|.||.|||||.|||||.||.|||||.|||||.||.||.|||.|.|||
RBAM_025260__   1895 TGCGGGAATCAGCGCAGGCCGCTTTCAGTTATGTCCGCTCGAAAGCGGAA   1944

BSNT_04098___   1945 GAACTTGGCATTGAACCTGACTTTCATGAGAAGTATGATATTCATATACA   1994
                     .|..|.||.||.||.||..|.||.||||||||||||||.||||||||.||
RBAM_025260__   1945 CAGTTCGGAATCGATCCGAAATTCCATGAGAAGTATGACATTCATATCCA   1994

BSNT_04098___   1995 TGTACCAGAGGGTGCGGTGCCAAAAGATGGTCCGTCAGCTGGTATTACGA   2044
                     |||.||.||.||.||||||||.|||||.||.||.||.||.||.|||||||
RBAM_025260__   1995 TGTCCCTGAAGGAGCGGTGCCGAAAGACGGCCCTTCTGCCGGAATTACGA   2044

BSNT_04098___   2045 TGGCAACAGCGCTTGTTTCTGCTTTAACGGGACGGGCGGTTTCGCGTGAA   2094
                     ||||.||.|||||.|||||.||.|||||||..||.|||||....||.|||
RBAM_025260__   2045 TGGCCACGGCGCTCGTTTCAGCATTAACGGACCGTGCGGTAAAACGCGAA   2094

BSNT_04098___   2095 GTCGGCATGACTGGGGAAATCACGCTTCGCGGGCGCGTGCTGCCGATCGG   2144
                     |||||.|||||.||.|||||||||||.||.||.||||||||.||||||||
RBAM_025260__   2095 GTCGGTATGACGGGAGAAATCACGCTGCGGGGCCGCGTGCTTCCGATCGG   2144

BSNT_04098___   2145 CGG-CTTAAAGGAAAAAGCGCTTGGCGCACATAGAGCGGGATTAACGACC   2193
                     ||| ||.||| |||||.|||||.|||||.||.||||||||..|.||.||.
RBAM_025260__   2145 CGGACTGAAA-GAAAAGGCGCTCGGCGCGCACAGAGCGGGCCTGACCACT   2193

BSNT_04098___   2194 ATTATTGCGCCTAAAGATAATGAAAAAGATATAGAGGATATTCCGGAAAG   2243
                     ||||||||||||||||||||.|||||||||||||||||||||||.|||||
RBAM_025260__   2194 ATTATTGCGCCTAAAGATAACGAAAAAGATATAGAGGATATTCCAGAAAG   2243

BSNT_04098___   2244 CGTCAGGGAGGGGCTGACATTTATATTGGCGTCCCACTTAGACGAGGTTT   2293
                     ||||||.||.||.||||..||||||||.|..||.|||.|.||.||.||||
RBAM_025260__   2244 CGTCAGAGAAGGACTGAAGTTTATATTCGTTTCTCACCTGGATGACGTTT   2293

BSNT_04098___   2294 TGGAACATGCCTTAGTAGGAGAGAAGAAATGA   2325
                     ||||||||||||||||||||||||||||||||
RBAM_025260__   2294 TGGAACATGCCTTAGTAGGAGAGAAGAAATGA   2325


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