Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04171 and RBAM_025650

See Amino acid alignment / Visit BSNT_04171 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:34
# Commandline: needle
#    -asequence dna-align/BSNT_04171___mutSB.1.9828.seq
#    -bsequence dna-align/RBAM_025650___mutSB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04171___mutSB-RBAM_025650___mutSB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04171___mutSB-RBAM_025650___mutSB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04171___mutSB
# 2: RBAM_025650___mutSB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2382
# Identity:    1888/2382 (79.3%)
# Similarity:  1888/2382 (79.3%)
# Gaps:          48/2382 ( 2.0%)
# Score: 7480.0
# 
#
#=======================================

BSNT_04171___      1 GTGCAGCAAAAAGTATTATCAGCTCTTGAATTTCATAAAGTGAAAGAACA     50
                     ||||||||||||||.||||||.|.|||||||||||||||||.||||||||
RBAM_025650__      1 GTGCAGCAAAAAGTGTTATCATCACTTGAATTTCATAAAGTAAAAGAACA     50

BSNT_04171___     51 GGTTATTGGGCATGCCGCTTCATCGCTCGGAAAAGAAATGCTTCTCGAGC    100
                     |.|||..|..||||||||.|||||||||||....||.|.||||||..|||
RBAM_025650__     51 GATTACCGCACATGCCGCCTCATCGCTCGGCCGGGAGAAGCTTCTGCAGC    100

BSNT_04171___    101 TTAAGCCTT---CTGCT-TCTATAGACGAAATTAAAAAACAGCTGGATGA    146
                     |.||.||||   |.|.| ||| .||||   ||..||||||||||||||||
RBAM_025650__    101 TGAAACCTTTGACGGATCTCT-CAGAC---ATCCAAAAACAGCTGGATGA    146

BSNT_04171___    147 AGTAGACGAAGCTTCTGACATTATCCGGCTGAGAGGCCAAGCGCCATTTG    196
                     |||.||.|||||.||.|...|.||.||..||||||||||.||.||.||.|
RBAM_025650__    147 AGTCGAAGAAGCATCCGCGGTCATGCGCTTGAGAGGCCATGCTCCGTTCG    196

BSNT_04171___    197 GCGGCCTTGTAGATATCAGAGGAGCGTTAAGACGGGCGGAAATCGGCAGC    246
                     |||||||....||.||.|||...||.|||.|.|||||||||||||||||.
RBAM_025650__    197 GCGGCCTGACCGACATAAGATCCGCTTTACGGCGGGCGGAAATCGGCAGT    246

BSNT_04171___    247 GTTCTCAGTCCTTCTGAATTCACTGAAATCTCAGGCCTGCTTTATGCAGT    296
                     ||.||.|..||..|.|||||.||.|||.|.||.||.|||||.|||||.||
RBAM_025650__    247 GTGCTGACGCCGGCGGAATTTACCGAATTGTCCGGGCTGCTGTATGCCGT    296

BSNT_04171___    297 TAAACAAATGAAACATTTTATCACCCAAATGGCTGAAGACGGTGTCGACA    346
                     ||||||||||||.||||||||||.|||||||.|.||||||||.||||.||
RBAM_025650__    297 TAAACAAATGAAGCATTTTATCAGCCAAATGACAGAAGACGGCGTCGGCA    346

BSNT_04171___    347 TTCCGCTGATCCATCAGCATGCTGAACAGCTTATCACGCTGTCCGATTTA    396
                     ||||||||||.||....|||||.|||.||||.||.||..|...||||||.
RBAM_025650__    347 TTCCGCTGATACAGGCCCATGCAGAAGAGCTGATTACATTAGGCGATTTG    396

BSNT_04171___    397 GAGCGGGACATTAATTCCTGCATTGATGATCACGGAGAAGTGCTTGATCA    446
                     ||..||||.|||||.||||||||||||||.||.||.||||||||||||||
RBAM_025650__    397 GAAAGGGAGATTAACTCCTGCATTGATGACCATGGGGAAGTGCTTGATCA    446

BSNT_04171___    447 TGCAT----CGGAAACATTAAGAGGAATCCGCACACAGCTCAGAACACTC    492
                     |||.|    ||    |.|||||.|||||||||||.||||||||.||.||.
RBAM_025650__    447 TGCGTCTCCCG----CTTTAAGGGGAATCCGCACGCAGCTCAGGACGCTT    492

BSNT_04171___    493 GAATCAAGAGTCAGAGACCGGTTAGAGTCGATGCTGCGTTCCTCTTCCGC    542
                     |||||||||||||||||||||.|.||.||.|||||||||||.||||||||
RBAM_025650__    493 GAATCAAGAGTCAGAGACCGGCTTGAATCAATGCTGCGTTCATCTTCCGC    542

BSNT_04171___    543 TTCGAAAATGCTGTCTGATACGATTGTTACGATTCGGAATGACCGCTTTG    592
                     |||.||||||||||||||.||.||.|||||||||||||||||||||||||
RBAM_025650__    543 TTCTAAAATGCTGTCTGACACCATCGTTACGATTCGGAATGACCGCTTTG    592

BSNT_04171___    593 TGATCCCGGTCAAACAGGAGTACAGATCCAGCTATGGAGGAATTGTGCAC    642
                     |.|||||||||||||||||.||||||||.|||||.||.||||||||.|||
RBAM_025650__    593 TCATCCCGGTCAAACAGGAATACAGATCAAGCTACGGCGGAATTGTCCAC    642

BSNT_04171___    643 GACACCTCATCCTCTGGTGCGACATTATTCATTGAACCGCAGGCGATTGT    692
                     ||.||.||.||.||.|||||||||.|.||.|||||||||||||||||.||
RBAM_025650__    643 GATACATCTTCATCCGGTGCGACACTGTTTATTGAACCGCAGGCGATCGT    692

BSNT_04171___    693 AGATATGAACAATTCCCTTCAGCAGGCGAAAGTGAAAGAAAAGCAAGAAA    742
                     ||||||||||||.||.|||||||||||||||||.||||||||.||.||||
RBAM_025650__    693 AGATATGAACAACTCGCTTCAGCAGGCGAAAGTAAAAGAAAAACAGGAAA    742

BSNT_04171___    743 TTGAACGGATTTTGCGTGTGCTGACAGAGAAAACGGCAGAGTATACAGAG    792
                     |.|||||||||.|.||..|||||||.|||.|.|||||.||..|.|||.|.
RBAM_025650__    743 TCGAACGGATTCTCCGAATGCTGACGGAGCATACGGCTGAACACACACAA    792

BSNT_04171___    793 GA----GCTATTTCTAGATTTGCAAGTGCTGCAGACGCTTGACTTTATTT    838
                     ||    ||    ||.||||.||.|||||||||||||.||.||.||.||||
RBAM_025650__    793 GAAATCGC----TCAAGATGTGGAAGTGCTGCAGACACTGGATTTCATTT    838

BSNT_04171___    839 TTGCAAAAGCTAGATATGCAAAAGCGGTTAAAGCGACAAAACCGATTATG    888
                     |.||.|||||.|||||.|||||||||.|.||.|||||||||||..|.|||
RBAM_025650__    839 TCGCCAAAGCGAGATACGCAAAAGCGATGAAGGCGACAAAACCACTCATG    888

BSNT_04171___    889 AAC-GACACCGGCTTTATCCGTTTGAAAAAAGCCCGCCATCCATTGCTTC    937
                     ||| ||.| |||.||||||||..||||||||||.||||||||..||||.|
RBAM_025650__    889 AACGGAGA-CGGTTTTATCCGGCTGAAAAAAGCGCGCCATCCGCTGCTGC    937

BSNT_04171___    938 CGCCTGACCAGGTTGTTGCCAATGACATCGAGCTTGGCCGCGATTTTTCA    987
                     |.|..||.||.||.||.|||||.||.||.||.||.|||.|.||||..|||
RBAM_025650__    938 CCCAAGATCAAGTCGTGGCCAACGATATTGAACTGGGCGGAGATTACTCA    987

BSNT_04171___    988 ACCATTGTCATCACAGGGCCAAACACCGGGGGGAAAACAGTCACCCTTAA   1037
                     ||.||.||.||||||||.||.||.||.||.||.|||||.||.||..|.||
RBAM_025650__    988 ACGATCGTTATCACAGGACCGAATACGGGCGGTAAAACCGTTACGTTAAA   1037

BSNT_04171___   1038 AACGTTAGGCCTGCTAACCTTAATGGCGCAATCAGGTCTTCATATCCCGG   1087
                     |||..|.||.|||||.||..||||||||||..|.||..|.||.||.||||
RBAM_025650__   1038 AACACTCGGGCTGCTGACGATAATGGCGCAGGCGGGATTGCACATACCGG   1087

BSNT_04171___   1088 CAGATGAAGGGTCAGAAGCGGCAGTATTTGAGCACGTATTCGCTGATATC   1137
                     |.|||||.||.||.|||||.||.||||||||..|.||.||.||.||||||
RBAM_025650__   1088 CTGATGAGGGATCGGAAGCAGCCGTATTTGACAATGTGTTTGCCGATATC   1137

BSNT_04171___   1138 GGTGATGAACAGTCGATTGAGCAAAGTTTAAGTACGTTCTCATCCCATAT   1187
                     ||.||||||||||||||.||.||||||.|.|||||||||||||||||.||
RBAM_025650__   1138 GGCGATGAACAGTCGATCGAACAAAGTCTGAGTACGTTCTCATCCCACAT   1187

BSNT_04171___   1188 GGTGAACATTGTCGGCATTTTAGAACAGGTCAATGAAAACAGCCTTGTGC   1237
                     |||.||.||.|||...||||||.||.|.||...|||||||||.|||||||
RBAM_025650__   1188 GGTCAATATCGTCAATATTTTAAAAGACGTGTCTGAAAACAGTCTTGTGC   1237

BSNT_04171___   1238 TTTTCGATGAACTTGGTGCAGGGACAGATCCGCAGGAGGGGGCGGCCCTC   1287
                     |.||.||||||||.|||||.||.||||||||||||||.||.|||||.||.
RBAM_025650__   1238 TGTTTGATGAACTCGGTGCCGGAACAGATCCGCAGGAAGGAGCGGCGCTT   1287

BSNT_04171___   1288 GCCATGAGCATCTTGGATGACGTGCATCGCACCAATGCACGAGTGTTAGC   1337
                     ||||||||||||.|.||.||.||.||.||.||.||.||..|||||.|.||
RBAM_025650__   1288 GCCATGAGCATCCTTGACGAAGTTCACCGGACAAACGCCAGAGTGCTTGC   1337

BSNT_04171___   1338 TACGACGCATTATCCGGAATTGAAGGCGTACGGCTATAACAGAGAAGGCG   1387
                     .||.||.||||||||||||.||||.||.|||||.|||||||||.||||||
RBAM_025650__   1338 GACAACCCATTATCCGGAACTGAAAGCATACGGATATAACAGACAAGGCG   1387

BSNT_04171___   1388 TCATGAATGCCAGCGTTGAATTTGACATCGAAACGCTGTCACCGACCTAT   1437
                     ||||||||||||||||||||||||||||.||||||||.||.||.||||||
RBAM_025650__   1388 TCATGAATGCCAGCGTTGAATTTGACATTGAAACGCTTTCGCCTACCTAT   1437

BSNT_04171___   1438 AAACTTTTAATTGGTGTGCCGGGTCGAAGCAATGCTTTCGAAATTTCAAA   1487
                     ||.|||.|.||.||.||||||||.||||||||.||.||.|||||.||||.
RBAM_025650__   1438 AAGCTTCTGATCGGAGTGCCGGGCCGAAGCAACGCATTTGAAATCTCAAG   1487

BSNT_04171___   1488 ACGCCTCGGGCTTCCGGACCATATCATCGGGCAGGCGAAGTCAGAAATGA   1537
                     ||||||.|||||||||||.|||||||||||.|||||||||||||||||||
RBAM_025650__   1488 ACGCCTTGGGCTTCCGGAGCATATCATCGGCCAGGCGAAGTCAGAAATGA   1537

BSNT_04171___   1538 CGGCCGAGCATAACGAAGTCGATACGATGATTGCGTCGCTGGAACAAAGC   1587
                     |.|||||.|||||||||||||||..||||||.||.|||||.|||.|||||
RBAM_025650__   1538 CCGCCGAACATAACGAAGTCGATCTGATGATCGCATCGCTTGAAAAAAGC   1587

BSNT_04171___   1588 AAAAAACGTGCGGAAGAAGAGCTTTCTGAGACAGAATCAATCAGAAAAGA   1637
                     ||||||.|.|||||.||||||||||||||.||.|||||||||||||||||
RBAM_025650__   1588 AAAAAAAGAGCGGATGAAGAGCTTTCTGAAACCGAATCAATCAGAAAAGA   1637

BSNT_04171___   1638 AGCGGAAAAACTGCATAAAGAGCTGCAGCAGCAAATCATCGAGCTTAACA   1687
                     |||.|||||||||||.|||||.||.||||||||||||||.|||||.|||.
RBAM_025650__   1638 AGCAGAAAAACTGCACAAAGATCTTCAGCAGCAAATCATTGAGCTGAACG   1687

BSNT_04171___   1688 GCAAAAAAGACAAAATGCTTGAAGAGGCAGAACAGCAGGCTGCTGAAAAA   1737
                     .|.|||||||.||||||.|.|||||.||.||||||.|.|||||.||||||
RBAM_025650__   1688 CCCAAAAAGATAAAATGATGGAAGAAGCCGAACAGAAAGCTGCGGAAAAA   1737

BSNT_04171___   1738 GTAAAAGCGGC----AATGAAAGAAGCCGAGGACATTATTCATGAATTGC   1783
                     .|..||||.||    |||    ||||||||..|.||.||.|..||   ||
RBAM_025650__   1738 CTGGAAGCCGCCGCAAAT----GAAGCCGAACAGATCATCCGCGA---GC   1780

BSNT_04171___   1784 GCA---CCATAAAAGAAGAACACAAATCCTTCAAGGATCACGAGCTGATT   1830
                     .||   ||||.||..|||||||||.||||||.|||||.||||||||||||
RBAM_025650__   1781 TCAGGTCCATCAAGCAAGAACACAGATCCTTTAAGGAACACGAGCTGATT   1830

BSNT_04171___   1831 AACGCGAAGAAACGGTTAGAAGGCGCTATGCCGGCTTTTGAAAAGTCCAA   1880
                     .||||.||.|||||..|.|.||.|||.|||||||||||||||||.||.||
RBAM_025650__   1831 GACGCCAAAAAACGTCTCGGAGACGCGATGCCGGCTTTTGAAAAATCAAA   1880

BSNT_04171___   1881 GAAACCGGAAAAACCGAA----AGCGCAAAAACGCGACTTTAAGCCTGGC   1926
                     |.|.|||||||    |||    ||.|.||||||||||..|.|||||.|||
RBAM_025650__   1881 GCAGCCGGAAA----GAAAAACAGAGAAAAAACGCGAGCTGAAGCCGGGC   1926

BSNT_04171___   1927 GACGAGGTGAAAGTCCTCACTTTCGGGCAAAAAGGAACATTGCTCGAAAA   1976
                     |||||.||.||.||.|||||.|||||.||||||||..|..||||.||.||
RBAM_025650__   1927 GACGAAGTAAAGGTGCTCACATTCGGACAAAAAGGGGCGCTGCTTGAGAA   1976

BSNT_04171___   1977 AACAGGCGGCAATGAATGGAATGTTCAAATCGGTATTTTAAAGATGAAAG   2026
                     |||.||||..||.||||||||.||.||||||||.||..|.||.|||||.|
RBAM_025650__   1977 AACCGGCGAGAAAGAATGGAACGTCCAAATCGGCATCCTCAAAATGAAGG   2026

BSNT_04171___   2027 TAAAAGAAAAAGATCTGGAGTTTATCAAATCAGCTCCGGAGCAAAAAAAA   2076
                     |.||.|||||||||||.||||||.||||.||.|||||.||.|..||||||
RBAM_025650__   2027 TGAAGGAAAAAGATCTTGAGTTTCTCAAGTCCGCTCCTGAACCGAAAAAA   2076

BSNT_04171___   2077 GAAAAAATCATTACAGCGGTCAAGGGAAAGGACTATCACGTATCGCTTGA   2126
                     ||||||...||.||.||.||.||.||.|||||.|||||||||||.|||||
RBAM_025650__   2077 GAAAAAGCAATCACCGCCGTAAAAGGGAAGGATTATCACGTATCCCTTGA   2126

BSNT_04171___   2127 ACTTGATCTCCGCGGCGAACGCTATGAAAATGCCCTCAGCCGGGTTGAAA   2176
                     ||||||.|||.|.||.||.||.||.|||||.|||||||||||.||.||||
RBAM_025650__   2127 ACTTGACCTCAGGGGAGAGCGTTACGAAAACGCCCTCAGCCGCGTCGAAA   2176

BSNT_04171___   2177 AATACTTGGATGATGCGGTGTTAGCCGGATATCCAAGAGTGTCAATCATC   2226
                     ||||.||.|||||.||||||.|.|||||..||||.||||||||.|||||.
RBAM_025650__   2177 AATATTTAGATGACGCGGTGCTTGCCGGCCATCCGAGAGTGTCCATCATT   2226

BSNT_04171___   2227 CACGGAAAAGGAACCGGCGCTTTAAGAAAAGGCGTACAGGATCTTCTGAA   2276
                     |||||||||||.||.|||||..|..|||||||.||.||||||||||||||
RBAM_025650__   2227 CACGGAAAAGGCACGGGCGCCCTCCGAAAAGGGGTGCAGGATCTTCTGAA   2276

BSNT_04171___   2277 AAACCACCGCAGCGTCAAAAGTTCCCGTTTCGGTGAAGCAGGTGAGGGAG   2326
                     |||||||||||||||.|||||.||.||.|||||.|||||.||.||.||||
RBAM_025650__   2277 AAACCACCGCAGCGTGAAAAGCTCGCGGTTCGGGGAAGCGGGAGAAGGAG   2326

BSNT_04171___   2327 GATCAGGCGTTACGGTTGTTGAACTAAAATAA   2358
                     ||||||||||.|||.||||.||||||||||||
RBAM_025650__   2327 GATCAGGCGTAACGATTGTCGAACTAAAATAA   2358


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