Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04295 and RBAM_026420

See Amino acid alignment / Visit BSNT_04295 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:44
# Commandline: needle
#    -asequence dna-align/BSNT_04295___tpx.1.9828.seq
#    -bsequence dna-align/RBAM_026420___tpx.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04295___tpx-RBAM_026420___tpx.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04295___tpx-RBAM_026420___tpx.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04295___tpx
# 2: RBAM_026420___tpx
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 508
# Identity:     414/508 (81.5%)
# Similarity:   414/508 (81.5%)
# Gaps:           8/508 ( 1.6%)
# Score: 1703.0
# 
#
#=======================================

BSNT_04295___      1 ATGGCTGAAATTACATTCAAAGGCGGTCCGGTTACACTTGTCGGACAAGA     50
                     |||||||||||||||||.||||||||..|.||.||.||..||||||||||
RBAM_026420__      1 ATGGCTGAAATTACATTTAAAGGCGGAGCCGTGACGCTGATCGGACAAGA     50

BSNT_04295___     51 AGTGAA----GGTAGGAGATCAAGCTCCTGATTTCACAGTGCTGACTAAC     96
                     ||||||    |||    ||.|||||||||||.|||||.||.|||||.|||
RBAM_026420__     51 AGTGAAACCGGGT----GACCAAGCTCCTGACTTCACGGTTCTGACAAAC     96

BSNT_04295___     97 AGCCTTGAAGAAAAATCGTTAGCTGACATGAAAGGAAAGGTAACGATTAT    146
                     .|..|.|||||.||..|.|||||.||.||||||||.||.||||||||.||
RBAM_026420__     97 GGATTAGAAGAGAAGACATTAGCAGATATGAAAGGGAAAGTAACGATCAT    146

BSNT_04295___    147 TTCTGTTATCCCTTCAATTGATACAGGTGTTTGTGATGCACAAACACGCC    196
                     .||.|||||.|||||.|||||.|||||.||.|||||.||.||.|||||||
RBAM_026420__    147 ATCCGTTATTCCTTCCATTGACACAGGCGTATGTGACGCGCAGACACGCC    196

BSNT_04295___    197 GTTTTAACGAAGAAGCTGCAAAGCTTGGAGATGTCAACGTCTACACAATC    246
                     |.||.|||||||||||.|||||.||.||.|||||.|||||.||.||||||
RBAM_026420__    197 GCTTCAACGAAGAAGCCGCAAAACTCGGTGATGTGAACGTTTATACAATC    246

BSNT_04295___    247 AGTGCAGACCTTCCATTCGCGCAAGCGCGCTGGTGCGGCGCTAACGGAAT    296
                     ||.||.||||||||.||.||.|||||||||||||||||.||.||||||||
RBAM_026420__    247 AGCGCCGACCTTCCGTTTGCACAAGCGCGCTGGTGCGGAGCGAACGGAAT    296

BSNT_04295___    297 TGACAAAGTGGAAACACTGTCTGACCACAGAGATATGTCATTTGGCGAAG    346
                     |||.|||||.||||||.|.||.||.||.|.|||.|||||||||||.||||
RBAM_026420__    297 TGATAAAGTTGAAACATTATCGGATCATAAAGAGATGTCATTTGGTGAAG    346

BSNT_04295___    347 CGTTCGGTGTGTATATTAAAGAACTTCGTCTGCTTGCGCGTTCCGTATTT    396
                     |.||||||||..|.||.||||||||||||||..|.||||||||||||||.
RBAM_026420__    347 CATTCGGTGTTCACATCAAAGAACTTCGTCTTTTGGCGCGTTCCGTATTC    396

BSNT_04295___    397 GTCCTTGATGAGAATGGAAAAGTCGTTTACGCTGAATATGTAAGCGAAGC    446
                     |||||||||.||.|.|||||||||||||||||.|||||.|||||||||||
RBAM_026420__    397 GTCCTTGATCAGGACGGAAAAGTCGTTTACGCGGAATACGTAAGCGAAGC    446

BSNT_04295___    447 AACAAACCACCCGAACTATGAAAAGCCAATTGAGGCTGCTAAGGCATTAG    496
                     .||||||||||||||.|||||||||||.||.||.|||||.||.||.|||.
RBAM_026420__    447 GACAAACCACCCGAATTATGAAAAGCCTATCGAAGCTGCAAAAGCGTTAA    496

BSNT_04295___    497 TGAAGTAA    504
                     |.||||||
RBAM_026420__    497 TCAAGTAA    504


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.