Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04328 and RBAM_026840
See
Amino acid alignment /
Visit
BSNT_04328 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:47
# Commandline: needle
# -asequence dna-align/BSNT_04328___motS.1.9828.seq
# -bsequence dna-align/RBAM_026840___ytxE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04328___motS-RBAM_026840___ytxE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04328___motS-RBAM_026840___ytxE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04328___motS
# 2: RBAM_026840___ytxE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 753
# Identity: 501/753 (66.5%)
# Similarity: 501/753 (66.5%)
# Gaps: 87/753 (11.6%)
# Score: 1649.5
#
#
#=======================================
BSNT_04328___ 1 ATGAAGCTTAGAAGAGAACGTTTTGAAAGAAGGAA-----TGGAA----- 40
|||||||||||||.|||.||||||||||||||.|| |||||
RBAM_026840__ 1 ATGAAGCTTAGAAAAGAGCGTTTTGAAAGAAGAAACAAACTGGAACATTC 50
BSNT_04328___ 41 --GCGGAAAAAACAGTCAATCTTCATCCAGCTGGATGGTAACCTTTACAG 88
|||| ||||.|.||.||||||||.||.||..|.|
RBAM_026840__ 51 CGGCGG---------------TTCACCGAGATGGATGGTGACGTTCGCTG 85
BSNT_04328___ 89 ATCTGATCACCTTGATCCTTGTGTTCTTTATTTTACTCTTTTCGATGTCC 138
|..|||||||..|.||.||.|||||||||||.||.||.|||||||||||.
RBAM_026840__ 86 ACTTGATCACGCTCATTCTCGTGTTCTTTATATTGCTTTTTTCGATGTCG 135
BSNT_04328___ 139 CAAATCGATCTGCAAAAATTCAAAGCGGCAGTGGACTCGATCCAGAAGGA 188
|||||.||...|.|||||||..||.|.||.||....|||||.||.|...|
RBAM_026840__ 136 CAAATAGACGCGGAAAAATTTCAATCTGCCGTTTCATCGATTCATACAAA 185
BSNT_04328___ 189 AGGCAACGGGCTTCAGCCGG----ACCAAACATCCATAGAAAAAAAGAAT 234
.||||.||||..|.|.|||| |.||.| ||.||.|||..|.|||
RBAM_026840__ 186 CGGCAGCGGGGGTGAACCGGCGTCATCAGA----CAAAGCAAACGAAAAT 231
BSNT_04328___ 235 ACATCCCCATCTGATACGAAGAAGCAAGAGGATCAGCAGGATCAGCT-TC 283
| ||||| ||||||..||| |.
RBAM_026840__ 232 A-----------------AAGAA-------------CAGGATTTGCTGTT 251
BSNT_04328___ 284 TCAAGAAAGTAAATACATATATAAAAGACAATCATTTGAAGGCCCAAA-T 332
.||| ||.||.||.|||||.|||||||...|||||||| ||..|.||| |
RBAM_026840__ 252 ACAA-AACGTGAAGACATACATAAAAGCGCATCATTTG-AGTTCGAAATT 299
BSNT_04328___ 333 GACAGCCAAACGGGATGAACGCGGTGTCGTGCTCGTTCTTCAGGAGGCTG 382
|||.||.||.||.|||||.|||||.||.||.||.||.|||||||||||.|
RBAM_026840__ 300 GACGGCGAAGCGCGATGAGCGCGGAGTGGTTCTGGTGCTTCAGGAGGCCG 349
BSNT_04328___ 383 TGCTGTTTGATACAGGTGAGGCAAAGGTGCTGAAAAATGCCGAAACACTT 432
|.||||||.|.|||||..|.||..|.|||||||||||.|||||..|..||
RBAM_026840__ 350 TTCTGTTTCAGACAGGAAAAGCGGATGTGCTGAAAAACGCCGAGCCGGTT 399
BSNT_04328___ 433 CTTCACCAAATTGCCGTTCTTCTTCAAACCATTCCAAATGACATTCAGGT 482
||.||.||.||.||.||.|||.|..||||.|||||.||||||||.|||||
RBAM_026840__ 400 CTGCATCAGATCGCGGTGCTTTTAAAAACAATTCCGAATGACATACAGGT 449
BSNT_04328___ 483 GGAGGGGCATACAGACAGCCGAAACATTTCGACATACCGATACCCGTCGA 532
.||.||.|||||.||||||||....|||||.||.||.|.||..|||||.|
RBAM_026840__ 450 AGAAGGCCATACGGACAGCCGCCGGATTTCCACCTATCAATTTCCGTCAA 499
BSNT_04328___ 533 ACTGGGAGCTATCAGCAGCACG---GGCAAGTGGGGTTATTCAATACTTC 579
|.||||||||.||..|.|||.| |||.||| ||.||.|..||.||.
RBAM_026840__ 500 ATTGGGAGCTGTCGTCTGCAAGAGCGGCGAGT---GTGATCCGGTATTTT 546
BSNT_04328___ 580 ACGTCTAAAGAGAAGCTTCCCTCCAAGCGCTTTATTGCTGTCGGTTATGC 629
||..|.||.||..|..||.||.||||.||.|||||..|||.|||.|||||
RBAM_026840__ 547 ACCGCGAATGAAGACTTTTCCGCCAAACGGTTTATCTCTGCCGGGTATGC 596
BSNT_04328___ 630 GGATACAAAGCCAGTAAAGGATAACAAGACAAAT---GAACACATGAAGG 676
||||||.||.||.||.|||||.||||| ||.| |.|||.|||||.|
RBAM_026840__ 597 GGATACGAAACCTGTGAAGGACAACAA---AAGTCCCGGACATATGAAAG 643
BSNT_04328___ 677 AAAATCGGCGTGTGGAAATAGTGATTAAAAAATCAAAAACGACCTCTTCG 726
||||.||.|||||.|||||.|||||.|| ||||||||||||.||.
RBAM_026840__ 644 AAAACCGCCGTGTAGAAATTGTGATCAA------AAAAACGACCTCCTCA 687
BSNT_04328___ 727 TAA 729
|||
RBAM_026840__ 688 TAA 690
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.