Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04358 and RBAM_027010

See Amino acid alignment / Visit BSNT_04358 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:49
# Commandline: needle
#    -asequence dna-align/BSNT_04358___trmB.1.9828.seq
#    -bsequence dna-align/RBAM_027010___trmB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04358___trmB-RBAM_027010___trmB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04358___trmB-RBAM_027010___trmB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04358___trmB
# 2: RBAM_027010___trmB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 659
# Identity:     514/659 (78.0%)
# Similarity:   514/659 (78.0%)
# Gaps:          22/659 ( 3.3%)
# Score: 2016.0
# 
#
#=======================================

BSNT_04358___      1 ATGAGAATGCGCCACAAGCCTTGGGCTGATGACTTTTTGGCTGAAAACGC     50
                     ||||||||||||||.||.||||||||..||||.|||.||||.||||||||
RBAM_027010__      1 ATGAGAATGCGCCATAAACCTTGGGCGAATGATTTTCTGGCAGAAAACGC     50

BSNT_04358___     51 AGATATTTCCATCAGCAATCCTGCTGATTATAAAGGGAAATGGAACACAG    100
                     .||.||..|||||||..||||.||..|.|||||||||...||||||||.|
RBAM_027010__     51 TGACATCGCCATCAGTGATCCGGCCCAGTATAAAGGGCGGTGGAACACGG    100

BSNT_04358___    101 TGTTTGGCAACGACAATCCGATCCATATCGAGGTTGGTACAGGAAAAGGC    150
                     |.||||||||.|||||.|||||||||||.||.||.|||||.||||||||.
RBAM_027010__    101 TCTTTGGCAATGACAACCCGATCCATATTGAAGTCGGTACGGGAAAAGGG    150

BSNT_04358___    151 CAATTTATTTCTGGTATGGCCAAACAAAATCCCGACATCAATTATATTGG    200
                     ||.||.|||||.||.||||||||.||.|||||.||.|||||.|||||.||
RBAM_027010__    151 CAGTTCATTTCAGGAATGGCCAAGCAGAATCCGGATATCAACTATATCGG    200

BSNT_04358___    201 TATTGAGTTATTTAAAAGCGTCATCGTGACAGCCGTCCAAAAAGTAAAAG    250
                     .||||||.|.|||||||||||||||||.||.|||||||||||||||||.|
RBAM_027010__    201 GATTGAGCTGTTTAAAAGCGTCATCGTCACTGCCGTCCAAAAAGTAAAGG    250

BSNT_04358___    251 ACAGCGAAGCGCAGAATGTAAAGCTTCTG---AATATAGATGCGGACACG    297
                     ||||||..||.||.|||||   .|.|.||   ||||||||.|||||.||.
RBAM_027010__    251 ACAGCGGGGCTCACAATGT---CCGTTTGTTAAATATAGACGCGGAAACA    297

BSNT_04358___    298 CTGACGGATGTGTTTGAGCCGGGGGAAGTGAAACGGGTCTACTTGAACTT    347
                     ||||..||.||.|||||.|.|||.|||.|.||.||.||.||..|.|||||
RBAM_027010__    298 CTGAATGACGTATTTGAACGGGGAGAAATCAAGCGCGTATATCTAAACTT    347

BSNT_04358___    348 TTCTGATCCTTGGCCGAAGAAACGGCATGAAAAACGCCGCCTGACATATT    397
                     ||||||.||.||||||||.||.||.||.|||||.|||||..|.|||| ||
RBAM_027010__    348 TTCTGACCCGTGGCCGAAAAACCGCCACGAAAAGCGCCGTTTAACAT-TT    396

BSNT_04358___    398 CCCAC-TTCCTCAAAAAATATGAAGAAGTAATGGGCAAAGGCGGATCGAT    446
                     ...|| |||.|.||||||||.||||||||.||||||.||...||...|||
RBAM_027010__    397 AAAACGTTCTTGAAAAAATACGAAGAAGTGATGGGCGAAACAGGTGAGAT    446

BSNT_04358___    447 TCATTTTAAAACGGACAACCGAGGTTTGTTTGAGTACTCTTTGAAGAGCT    496
                     ||||||||||||.||.|||||.|||||.||.||.||||||.||||.||||
RBAM_027010__    447 TCATTTTAAAACCGATAACCGCGGTTTATTCGAATACTCTCTGAAAAGCT    496

BSNT_04358___    497 TCTCTGAGTACGGCCTCCTGCTGACATACGTCAGCCTCGATTTGCATAAC    546
                     |.||.||.||||||||.||.|||||..|.||||||||.|||.||||.|||
RBAM_027010__    497 TTTCCGAATACGGCCTGCTTCTGACGGAAGTCAGCCTTGATCTGCACAAC    546

BSNT_04358___    547 AGCAATCTCGAA-GGCAATATTATGACAGAATATGAAGAAAAATTCTCTG    595
                     |||.||| |||| ||||||||||||||||||||.||||||||||||||.|
RBAM_027010__    547 AGCGATC-CGAAGGGCAATATTATGACAGAATACGAAGAAAAATTCTCCG    595

BSNT_04358___    596 CACTCGGCCAGCCGATCTATCGGGCTGAGGTTGAATGGAGAACGTAA---    642
                     |.||||||||||||||.||.|||||.||.||||||||||||||..||   
RBAM_027010__    596 CGCTCGGCCAGCCGATTTACCGGGCCGAAGTTGAATGGAGAACAAAAGAC    645

BSNT_04358___    642 ---------    642
                              
RBAM_027010__    646 AGACTCTGA    654


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