Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04408 and RBAM_027200
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:52
# Commandline: needle
# -asequence dna-align/BSNT_04408___amyD.1.9828.seq
# -bsequence dna-align/RBAM_027200___amyD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04408___amyD-RBAM_027200___amyD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04408___amyD-RBAM_027200___amyD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04408___amyD
# 2: RBAM_027200___amyD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 937
# Identity: 666/937 (71.1%)
# Similarity: 666/937 (71.1%)
# Gaps: 95/937 (10.1%)
# Score: 2417.0
#
#
#=======================================
BSNT_04408___ 1 ATGAGTGAGATCGCAAGGGACGTTCATGTGAAAC---AGGTT-------- 39
||||||||..|.|||| ..||||| |||.|
RBAM_027200__ 1 ATGAGTGATCTTGCAA-----------AAGAAACCCAAGGATTTCAACAT 39
BSNT_04408___ 40 ---AAGCC-AAAAAAGCAGTCCTCACTTTGGTGGATGTACATTCCTGCT- 84
||||| ..||||.|.| |.|||||.||||||||||||.||||.|||
RBAM_027200__ 40 CAAAAGCCGCTAAAACCCG-CGTCACTGTGGTGGATGTACGTTCCCGCTC 88
BSNT_04408___ 85 TTGCTCTCCGTTCTGGTCTTTATGATTTATCCGTTTGTGAAAGGCACATT 134
|||| |.|.|||.|..|.||.|||||||.|||||||||.||||||.|.||
RBAM_027200__ 89 TTGC-CACGGTTTTTATTTTCATGATTTTTCCGTTTGTCAAAGGCGCTTT 137
BSNT_04408___ 135 GATTACCTTTACAAACTGGAACGGCTTTTCACAAGTC-TACCAATGGGTT 183
.||.||.||||||||||||||||||||.|||| ||.| ||.||||||||.
RBAM_027200__ 138 TATCACATTTACAAACTGGAACGGCTTCTCAC-AGACGTATCAATGGGTG 186
BSNT_04408___ 184 GGATTCGCGCAATATGAAAGGCTGTTTTCTGATCCTGACACTTGGCATAT 233
||..|..|.||||||.|||||||.|||.|.|||||.|||||.||||.|.|
RBAM_027200__ 187 GGGGTTACTCAATATAAAAGGCTTTTTACAGATCCGGACACGTGGCTTGT 236
BSNT_04408___ 234 CTTAAAAAACACGCTGCTTTACGGGCTTGGCAGCACTTTTTTTCAAAATG 283
..|.||||||||..||||||||||..|.||.||||||||||||||.|||.
RBAM_027200__ 237 TGTGAAAAACACTTTGCTTTACGGCATCGGAAGCACTTTTTTTCAGAATA 286
BSNT_04408___ 284 TGGTCGGGCTTCTATACGCTCTGCTCTTAAATCAAAGCATTAAAACGAAA 333
||.||||.|||.||||.||.|||||.||.|||||.|||.|.||||.|||.
RBAM_027200__ 287 TGCTCGGACTTTTATATGCGCTGCTTTTGAATCAGAGCTTAAAAATGAAG 336
BSNT_04408___ 334 GCGGTAACAAGAACAATTGTGTATTTGCCGGTGATGATCAGCCCGCTCAT 383
|||.|.||||||||.||.||.||.|||||.||.||.|||||.|||||.||
RBAM_027200__ 337 GCGCTCACAAGAACGATCGTCTACTTGCCCGTCATTATCAGTCCGCTGAT 386
BSNT_04408___ 384 TATGGGCTACATTTGGTACTTTTTCTTCTCCTATGACGGAGGCGCGCTCA 433
||||||.|||||||||||.|||.|.|||||.||||||||.||.|||||.|
RBAM_027200__ 387 TATGGGATACATTTGGTATTTTATTTTCTCATATGACGGGGGTGCGCTGA 436
BSNT_04408___ 434 ATGATTTGCTCGGGGTCTTCGGCATCAGCCCTATTAATGCGCTCGCCAGT 483
|||||.||||.||.|...|.||.|||.|.|||.|.||.|| ||.|.||..
RBAM_027200__ 437 ATGATGTGCTTGGCGCACTGGGAATCGGTCCTGTCAACGC-CTTGGCAAG 485
BSNT_04408___ 484 CCCT--------------------------------------------CG 489
|||| ||
RBAM_027200__ 486 CCCTGCGGCAAACCCGTGGATTATCGTCATGATTAACACATATCAATACG 535
BSNT_04408___ 490 -----ATCGCTATGGTTGTCTACTTAGCCGGTCTGCAAAGCATTCCGAAA 534
||.||.|||.||||.||.||.||.||.||||||||||||||||||
RBAM_027200__ 536 CAGGCATTGCGATGATTGTATATTTGGCGGGGCTGCAAAGCATTCCGAAA 585
BSNT_04408___ 535 GACTACTATGAAGCGGCGCAAATGGATGGCGCGAAACAAGG---CCAGCA 581
||.||.||.|||||.||..|||||||||||||| ..||| .||||.
RBAM_027200__ 586 GATTATTACGAAGCCGCAAAAATGGATGGCGCG---GGAGGTCTTCAGCC 632
BSNT_04408___ 582 GTTTTTTACCATCACGCTGCCGCTGTTAATGCCCTCCATTACCATTAATA 631
||||||.||||||||.|||||..|.||.|||||..|..|.|||||.||.|
RBAM_027200__ 633 GTTTTTCACCATCACCCTGCCTTTATTGATGCCGGCTGTCACCATCAACA 682
BSNT_04408___ 632 TGGTCATCAACATTATCGGAGGCTTAAAGCTGTTTGACGTCATCATTGCA 681
||||||||||.||.|||||.||..|.|||||||||||.|||||..|.||.
RBAM_027200__ 683 TGGTCATCAATATCATCGGCGGGCTGAAGCTGTTTGATGTCATTTTCGCG 732
BSNT_04408___ 682 CTCACCGCTGGCGGCCCCGGAAATGCGTCACAATCCATGTCCACGTTTAT 731
||.|||||.|||||.||.||.|||.|.||.|||||.|||||.||||||||
RBAM_027200__ 733 CTGACCGCAGGCGGGCCGGGCAATTCCTCTCAATCGATGTCAACGTTTAT 782
BSNT_04408___ 732 GTATGATTTGTATTTCAAACGGCAGGATGCCGGCTATGCCGCAACGCAAG 781
|||||||||.|||||.||||||||||||||.||.||||||||..|.||||
RBAM_027200__ 783 GTATGATTTATATTTTAAACGGCAGGATGCGGGATATGCCGCCGCCCAAG 832
BSNT_04408___ 782 GCATATTTATGGCATTTGTCATT----TTGATCATCAGCTTTTGCGCGCT 827
||.|.|||||| |..|||||| ||| ||||||||||||..||.||
RBAM_027200__ 833 GCGTGTTTATG---TCCGTCATTATTCTTG-TCATCAGCTTTTCGGCTCT 878
BSNT_04408___ 828 TGCGTACTTTAAAAGAAAGGAGACGGAAATGTCATGA 864
.|.|||.||.||..|||||||||||||||||||||||
RBAM_027200__ 879 CGTGTATTTCAAGCGAAAGGAGACGGAAATGTCATGA 915
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