Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04408 and RBAM_027200

See DNA alignment / Visit BSNT_04408 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:52
# Commandline: needle
#    -asequence pep-align/BSNT_04408___amyD.1.9828.seq
#    -bsequence pep-align/RBAM_027200___amyD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04408___amyD-RBAM_027200___amyD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04408___amyD-RBAM_027200___amyD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04408___amyD
# 2: RBAM_027200___amyD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 304
# Identity:     226/304 (74.3%)
# Similarity:   258/304 (84.9%)
# Gaps:          17/304 ( 5.6%)
# Score: 1202.5
# 
#
#=======================================

BSNT_04408___      1 MSEIARDVH-VKQVKPKKQSSLWWMYIPALLSVLVFMIYPFVKGTLITFT     49
                     ||::|::.. .:..||.|.:||||||:|||.:|.:|||:|||||..||||
RBAM_027200__      1 MSDLAKETQGFQHQKPLKPASLWWMYVPALATVFIFMIFPFVKGAFITFT     50

BSNT_04408___     50 NWNGFSQVYQWVGFAQYERLFSDPDTWHILKNTLLYGLGSTFFQNVVGLL     99
                     |||||||.|||||..||:|||:|||||.::|||||||:|||||||::|||
RBAM_027200__     51 NWNGFSQTYQWVGVTQYKRLFTDPDTWLVVKNTLLYGIGSTFFQNMLGLL    100

BSNT_04408___    100 YALLLNQSIKTKAVTRTIVYLPVMISPLIMGYIWYFFFSYDGGALNDLLG    149
                     ||||||||:|.||:|||||||||:||||||||||||.||||||||||:||
RBAM_027200__    101 YALLLNQSLKMKALTRTIVYLPVIISPLIMGYIWYFIFSYDGGALNDVLG    150

BSNT_04408___    150 VFGISPINALASPS----------------IAMVVYLAGLQSIPKDYYEA    183
                     ..||.|:||||||:                |||:||||||||||||||||
RBAM_027200__    151 ALGIGPVNALASPAANPWIIVMINTYQYAGIAMIVYLAGLQSIPKDYYEA    200

BSNT_04408___    184 AQMDGAKQGQQFFTITLPLLMPSITINMVINIIGGLKLFDVIIALTAGGP    233
                     |:||||...|.|||||||||||::||||||||||||||||||.|||||||
RBAM_027200__    201 AKMDGAGGLQPFFTITLPLLMPAVTINMVINIIGGLKLFDVIFALTAGGP    250

BSNT_04408___    234 GNASQSMSTFMYDLYFKRQDAGYAATQGIFMAFVILIISFCALAYFKRKE    283
                     ||:||||||||||||||||||||||.||:||:.:||:|||.||.||||||
RBAM_027200__    251 GNSSQSMSTFMYDLYFKRQDAGYAAAQGVFMSVIILVISFSALVYFKRKE    300

BSNT_04408___    284 TEMS    287
                     ||||
RBAM_027200__    301 TEMS    304


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