Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04410 and RBAM_027210

See Amino acid alignment / Visit BSNT_04410 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:52
# Commandline: needle
#    -asequence dna-align/BSNT_04410___amyC.1.9828.seq
#    -bsequence dna-align/RBAM_027210___amyC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04410___amyC-RBAM_027210___amyC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04410___amyC-RBAM_027210___amyC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04410___amyC
# 2: RBAM_027210___amyC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 840
# Identity:     640/840 (76.2%)
# Similarity:   640/840 (76.2%)
# Gaps:          27/840 ( 3.2%)
# Score: 2390.5
# 
#
#=======================================

BSNT_04410___      1 ATGAGAGCCGCCCGTACAAAAAGCATGCGGATCATTACGCTTCTTGCAGC     50
                     ||||.|.|.||||         |.||||||||..|||||||..|.|||||
RBAM_027210__      1 ATGAAAACAGCCC---------GAATGCGGATTTTTACGCTGTTGGCAGC     41

BSNT_04410___     51 CATTGTGGCCT-GTGCG--CATTTTATTCCTTTTTATATCCTGCTGACCA     97
                     |.||.|   || |||||  |||.||.|.||.||||||||..|||||||||
RBAM_027210__     42 CGTTAT---CTCGTGCGTTCATATTGTCCCCTTTTATATTTTGCTGACCA     88

BSNT_04410___     98 CTTCATTGAAAGCAAAAGGAGACTACAGTTCGAAATGGATATTTCCAGCC    147
                     |.|||||.|||||||||||.|||||||||||.||||||....|.|||.||
RBAM_027210__     89 CGTCATTAAAAGCAAAAGGTGACTACAGTTCAAAATGGTCGCTGCCATCC    138

BSNT_04410___    148 GACATCTCCTTTCATAATTTTTCAGAGGCGTGGGAGCGCGCTTCGCTAGG    197
                     |.|.|.||.|||||.||||||...||.||.|||||.||.||.||.||.||
RBAM_027210__    139 GCCTTTTCATTTCAGAATTTTCGTGAAGCATGGGAACGTGCCTCTCTCGG    188

BSNT_04410___    198 AAACTCTTTTATAAACACCATGATCATCACAGGTTTTTCTGCCTTGTTAT    247
                     ..|.||.|||.|.|||||.||.|||||.||||...||||.|||...||||
RBAM_027210__    189 GCAATCCTTTCTGAACACGATCATCATTACAGCCGTTTCCGCCGCTTTAT    238

BSNT_04410___    248 TAATTATATTCGGCTCACTTGCCGCCTACCCGCTTGCCCGGCGGGAAACG    297
                     |||||.|..|.||.||.||||||||.||||||||.||..|..|..|.||.
RBAM_027210__    239 TAATTTTCATGGGTTCGCTTGCCGCATACCCGCTCGCAAGAAGAAATACA    288

BSNT_04410___    298 AAACTGAATAAAGCCGT-TTTTGCCTTGCTGATTTCCATTATGATCATCC    346
                     ||.|||||.|||..||| ||..||||| .|||||||.||.||||||||||
RBAM_027210__    289 AAGCTGAACAAAATCGTCTTCGGCCTT-TTGATTTCAATCATGATCATCC    337

BSNT_04410___    347 CTCCGTTAACGTCCATGGTTCCTTTGTACCGAATGGTCGTGGACGCCGGA    396
                     |.||.||.||.||||||||||||||.|||...|||||||..||.||.||.
RBAM_027210__    338 CGCCTTTGACTTCCATGGTTCCTTTATACAAGATGGTCGCTGATGCGGGG    387

BSNT_04410___    397 ATGGTCAATACACA---CGCAATCGCCATTTTCATCAATACAGCGGCTTA    443
                     .||.|||||||.||   ||||   ||||||.||||.|||||.||.||.||
RBAM_027210__    388 CTGATCAATACGCATGCCGCA---GCCATTCTCATTAATACGGCTGCATA    434

BSNT_04410___    444 CATGCCTTTAACCGTATTCTTATATTCAGGCTTTATCCGATCGACCATTC    493
                     .|||||..|.|||||.||||||||||||||.||||||||.||..||||||
RBAM_027210__    435 TATGCCGCTGACCGTTTTCTTATATTCAGGGTTTATCCGCTCTTCCATTC    484

BSNT_04410___    494 CAAAAGAGCTTGAAGAAGCTGCAAGAATTGACGGCGCAGGCATGCTGAAA    543
                     |.|||||||||||.|||||.||.||.||.||||||||.||..||.|.|..
RBAM_027210__    485 CGAAAGAGCTTGAGGAAGCCGCCAGGATGGACGGCGCGGGATTGATCAGG    534

BSNT_04410___    544 ATCTTTTT-TACGATTGTGTTTCCTCTGCTGAAGCCGATCACTGCGACCA    592
                     | |||||| |||.||.|||||||||.||.||||.|||||.||.||.||..
RBAM_027210__    535 A-CTTTTTATACAATCGTGTTTCCTTTGTTGAAACCGATTACCGCAACGG    583

BSNT_04410___    593 TCTGTATTATTTCTTGTGTCTTTATTTGGAACGACTATCAATTTGCCATT    642
                     ||||.|||||.||.|||||.|||||.||||||||.||.||||||||.|||
RBAM_027210__    584 TCTGCATTATGTCCTGTGTGTTTATCTGGAACGATTACCAATTTGCGATT    633

BSNT_04410___    643 TTCTTTTTACAAGATCAAAAGGTTCAGACATTAACAGTAGCCATGGCAGG    692
                     |||||||||||||||||||||||.||||||||.||.||.||||||||.||
RBAM_027210__    634 TTCTTTTTACAAGATCAAAAGGTGCAGACATTGACCGTGGCCATGGCGGG    683

BSNT_04410___    693 TTTTTTCGGAGAAAACGCAAACAACCTTCATTTAGTTGCCGCAGCGGCAC    742
                     .||||||||.||||||||.|||||.|||||.|||||.||||||||.||..
RBAM_027210__    684 ATTTTTCGGCGAAAACGCGAACAATCTTCACTTAGTCGCCGCAGCCGCGA    733

BSNT_04410___    743 TTATGGCAATGCTGCCGATGGTTGTTCTGTTTTTGGCGCTGCAAAAATAC    792
                     |.|||||.||||||||||||||.||..|||||||||||||.||||||||.
RBAM_027210__    734 TCATGGCGATGCTGCCGATGGTCGTATTGTTTTTGGCGCTTCAAAAATAT    783

BSNT_04410___    793 TTTATTGCCGGCCTGTCTTCCGGAGCGGT-AAAGGGTTAA    831
                     |||||..|.||.|||||.|||||.||||| |||||.|.| 
RBAM_027210__    784 TTTATCTCAGGGCTGTCCTCCGGGGCGGTCAAAGGCTGA-    822


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04410 and RBAM_027210

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
