Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04444 and RBAM_027530
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:55
# Commandline: needle
# -asequence dna-align/BSNT_04444___ytpA.1.9828.seq
# -bsequence dna-align/RBAM_027530___ytpA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04444___ytpA-RBAM_027530___ytpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04444___ytpA-RBAM_027530___ytpA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04444___ytpA
# 2: RBAM_027530___ytpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 783
# Identity: 630/783 (80.5%)
# Similarity: 630/783 (80.5%)
# Gaps: 6/783 ( 0.8%)
# Score: 2521.0
#
#
#=======================================
BSNT_04444___ 1 ATGTGGACCTGGAAAGCAGACAGACCTGTTGCAGT--GATTGTAATCATT 48
||||||||.||||||||||||||.||.|| |.|| .|||||.||.||.
RBAM_027530__ 1 ATGTGGACTTGGAAAGCAGACAGGCCCGT--CGGTACCATTGTCATTATC 48
BSNT_04444___ 49 CACGGGGCAAGTGAATATCACGGACGATATAAATGGCTGATTGAAATGTG 98
|||||||||||.|||||.||||||||.|||||||||||..||||||||||
RBAM_027530__ 49 CACGGGGCAAGCGAATACCACGGACGTTATAAATGGCTCGTTGAAATGTG 98
BSNT_04444___ 99 GCGGTCTTCGGGTTATCACGTTGTCATGGGCGATTTGCCTGGACAGGGAA 148
|.|.|||||.||.|||.||||.||.||||||||||||||.||.|||||||
RBAM_027530__ 99 GAGATCTTCCGGATATAACGTGGTGATGGGCGATTTGCCCGGTCAGGGAA 148
BSNT_04444___ 149 CAACGACAAGAGCGAGAGGGCATATTCGCTCGTTTCAAGAATACATTGAT 198
|..||||..|.||.|||||||||||||||||.||.|||||||||||||||
RBAM_027530__ 149 CGTCGACCCGCGCCAGAGGGCATATTCGCTCTTTCCAAGAATACATTGAT 198
BSNT_04444___ 199 GAAGTAGATGCTTGGATAGATAAAGCGCGAACCTTTGATCTGCCGGTTTT 248
|||||||||...|||||.|||||||||.||||..||||...|||.|||||
RBAM_027530__ 199 GAAGTAGATATATGGATTGATAAAGCGAGAACGCTTGAAGCGCCCGTTTT 248
BSNT_04444___ 249 TCTTCTAGGTCACAGCATGGGCGGTCTGGTCGCGATTGAATGGGTTAAAC 298
.|||.|.||.||||||||||||||.|||.|.|||||.||||||.||||.|
RBAM_027530__ 249 CCTTTTGGGCCACAGCATGGGCGGACTGATTGCGATAGAATGGTTTAAGC 298
BSNT_04444___ 299 AGCAAAGAAATCCCCGGATTACGGGAATTATTTTATCATCACCGTGTCTC 348
||||.|||||||||||.|||||||.|.|.||||||||||||||.|||||.
RBAM_027530__ 299 AGCAGAGAAATCCCCGCATTACGGCACTCATTTTATCATCACCTTGTCTG 348
BSNT_04444___ 349 GGACTGCAAATTAAAGTCAATAAAGCGCTTGATCTTGCATCAAAAGGTCT 398
||.||||||||.|||||||||||||..||||||.||||.||.|||||.||
RBAM_027530__ 349 GGTCTGCAAATAAAAGTCAATAAAGTCCTTGATTTTGCGTCTAAAGGACT 398
BSNT_04444___ 399 GAATGTCATCGCTCCGTCACTTAAGGTTGATTCGGGATTATCAATTGATA 448
|||.|||.||||||||||.||.|..||.|||||.||.||||||..|||||
RBAM_027530__ 399 GAACGTCCTCGCTCCGTCCCTCAGAGTGGATTCCGGCTTATCACCTGATA 448
BSNT_04444___ 449 TGGCGACGCGCAATGAGGACGTCATCGAGGCTGACCAAAATGATTCGTTA 498
||||.|||.|.||||.|||..|.||.||.||.||.|||||.|||||.|||
RBAM_027530__ 449 TGGCAACGAGGAATGCGGATATGATTGAAGCGGATCAAAACGATTCTTTA 498
BSNT_04444___ 499 TACGTCAGGAAAGTTTCTGTCAGATGGTACAGAGAGCTTTTAAAGACAAT 548
||.||||.|||.||.||.||.|||||||||||||||||||||||.||.||
RBAM_027530__ 499 TATGTCACGAAGGTATCCGTAAGATGGTACAGAGAGCTTTTAAAAACCAT 548
BSNT_04444___ 549 TGAATCGGCAATGGTGCCGACAGAGGCATTTTTGAAAGTTCCGCTTCTTG 598
|||..|.||.|||||||||||.||.||.|||||.||.||.|||||| |||
RBAM_027530__ 549 TGATGCCGCTATGGTGCCGACTGATGCGTTTTTAAAGGTGCCGCTT-TTG 597
BSNT_04444___ 599 -TGATGCAAGCCGGTGATGACAAGCTTGTTGACAAAACGATGGTCATCAA 647
|.|||||.|.|||.||||||||..|.||.||.||||.||.||||..|||
RBAM_027530__ 598 CTTATGCAGGGCGGAGATGACAAAATCGTCGATAAAATGAAGGTCCGCAA 647
BSNT_04444___ 648 GTGGTTTAATGGTGTTGCTTCTCATAATAAAGCATACAGAGAGTGGGAAG 697
.||||||...|||||.|||||.|||||||||.|.|||.|.||.|||||||
RBAM_027530__ 648 ATGGTTTTCCGGTGTGGCTTCCCATAATAAATCGTACCGGGAATGGGAAG 697
BSNT_04444___ 698 GGCTTTACCATGAGATCTTCAATGAACCCGAGAGAGAAGATGTTTTTAAA 747
|||||||.|||||.||.||.||||||||.||.||||||..|||.|||||.
RBAM_027530__ 698 GGCTTTATCATGAAATTTTTAATGAACCGGAAAGAGAAACTGTGTTTAAG 747
BSNT_04444___ 748 GCAGCAAGAGCGTTTACTGATCAATATATTTGA 780
||.||||.|||.|||||.|||||.|||||||||
RBAM_027530__ 748 GCGGCAAAAGCCTTTACAGATCAGTATATTTGA 780
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