Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04447 and RBAM_027560

See Amino acid alignment / Visit BSNT_04447 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:57
# Commandline: needle
#    -asequence dna-align/BSNT_04447___asnB.1.9828.seq
#    -bsequence dna-align/RBAM_027560___asnB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04447___asnB-RBAM_027560___asnB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04447___asnB-RBAM_027560___asnB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04447___asnB
# 2: RBAM_027560___asnB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1912
# Identity:    1605/1912 (83.9%)
# Similarity:  1605/1912 (83.9%)
# Gaps:          26/1912 ( 1.4%)
# Score: 6802.5
# 
#
#=======================================

BSNT_04447___      1 ATGTGTGGATTTGTCGGGGTTTTTAACAAGCATCCGTTAGCTCAAACCGC     50
                     |||||||||||||||||.||||||||.||||||||.|||.||||||||||
RBAM_027560__      1 ATGTGTGGATTTGTCGGTGTTTTTAATAAGCATCCATTAACTCAAACCGC     50

BSNT_04447___     51 TGATCAAGAAGAACTAATCAAACAAATGAACCAAATGATCGTTCACCGCG    100
                     .|||||||||||.|||||||||||||||||||||||||||||||||||||
RBAM_027560__     51 AGATCAAGAAGAGCTAATCAAACAAATGAACCAAATGATCGTTCACCGCG    100

BSNT_04447___    101 GTCCTGACAGTGATGGATATTTCCATGATGAGCACGTCGGCTTCGGATTC    150
                     ||||||||||.|||||.||||..|||||.|||||||||||.|||||.|||
RBAM_027560__    101 GTCCTGACAGCGATGGGTATTATCATGACGAGCACGTCGGATTCGGCTTC    150

BSNT_04447___    151 AGACGGCTCAGCATTATTGATGTAGAAAATGGCGGACAGCCTTTATCATA    200
                     |||||||||||.||||||||.||||||||.||||||||||||||||||||
RBAM_027560__    151 AGACGGCTCAGTATTATTGACGTAGAAAACGGCGGACAGCCTTTATCATA    200

BSNT_04447___    201 TGAAGATGAAACATATTGGATTATCTTTAACGGAGAAATCTATAACTATA    250
                     ||||||.||||.|||||||||.||.||||||||.||||||||||||||.|
RBAM_027560__    201 TGAAGACGAAAAATATTGGATCATTTTTAACGGCGAAATCTATAACTACA    250

BSNT_04447___    251 TCGAACTGAGAGAAGAACTTGAAGCAAAGGGGTACACATTCAACACGGAT    300
                     |.|||.||||||||||.||||||||.||.||.|||||.|||||.||.|||
RBAM_027560__    251 TTGAATTGAGAGAAGAGCTTGAAGCCAAAGGCTACACTTTCAATACAGAT    300

BSNT_04447___    301 TCGGACACAGAGGTTCTTCTTGCGACTTACCGTCACTATAAAGAAGAAGC    350
                     ||.||.||.||.||.||.||||||||.||||||||.||||||||||||||
RBAM_027560__    301 TCCGATACCGAAGTGCTCCTTGCGACATACCGTCATTATAAAGAAGAAGC    350

BSNT_04447___    351 GGCGTCCAAACTGCGCGGTATGTTTGCCTTTCTGATTTGGAATAAAAACG    400
                     .||.||.||.||.|||||.||||||||.|||.|.||.|||||.|||...|
RBAM_027560__    351 TGCTTCAAAGCTTCGCGGAATGTTTGCGTTTTTAATCTGGAACAAAGCTG    400

BSNT_04447___    401 A-----TCATGTGCTTTATGGGGCAAGAGATCCATTCGGCATTAAACCGT    445
                     |     |||||     ||.||.||.|||||.||.|||||||||||||||.
RBAM_027560__    401 ACCGCGTCATG-----TACGGCGCGAGAGACCCGTTCGGCATTAAACCGC    445

BSNT_04447___    446 TGTATTACACAACGATCAATGATCAGGTTTATTTTGCCTCAGAGAGAAAA    495
                     |||||||||||||.|||...||..|.||.||||||||.||.||.||||||
RBAM_027560__    446 TGTATTACACAACCATCGGGGACAAAGTATATTTTGCATCTGAAAGAAAA    495

BSNT_04447___    496 AGTTTAATGGTTGCTCAGAATGATATTGAAATAGATAAAGAGGCATTGCA    545
                     ||||||||||..|||||.||.|..|||||..|.||||.||...|.||.||
RBAM_027560__    496 AGTTTAATGGCCGCTCAAAACGGCATTGATCTTGATACAGCTTCTTTACA    545

BSNT_04447___    546 GCAGTACATGTCTTTCCAATTTGTTCCTGAACCAAGCACGCTTGATGCCC    595
                     |||.||.||||||||||||||.|||||||||||.|||||||||||.||..
RBAM_027560__    546 GCAATATATGTCTTTCCAATTCGTTCCTGAACCGAGCACGCTTGACGCTG    595

BSNT_04447___    596 ATGTGAAAAAAGTAGAGCCGGGTTCA--CAGTTCACAATCCGCCCGGACG    643
                     |.|||||||||||.||||||||  ||  |||||.||.|||||||||||.|
RBAM_027560__    596 AAGTGAAAAAAGTCGAGCCGGG--CAGCCAGTTTACGATCCGCCCGGAAG    643

BSNT_04447___    644 GCGATATCACATTCAAAACGTATTTCAAAGCGAACTTCAAGCCGGTTCAG    693
                     ||||||||.|.||.|||||.|||||||||||||||||.|||||.||||||
RBAM_027560__    644 GCGATATCGCGTTTAAAACATATTTCAAAGCGAACTTTAAGCCTGTTCAG    693

BSNT_04447___    694 ACTGAAGAAGACAAGCTTGTGAAAGAAGTCCGAGACGCGATCTATGACTC    743
                     .||||.|||||.||..|.||||||||||||.|||||||.||||.||||||
RBAM_027560__    694 TCTGATGAAGATAAATTGGTGAAAGAAGTCAGAGACGCAATCTTTGACTC    743

BSNT_04447___    744 TGTAAACGTTCATATGAGAAGTGACGTTCCTGTCGGTTCGTTCCTGTCTG    793
                     |||.||.|||||.||||||||||||||.||||||||||||||.||.||.|
RBAM_027560__    744 TGTCAAAGTTCACATGAGAAGTGACGTGCCTGTCGGTTCGTTTCTATCCG    793

BSNT_04447___    794 GCGGGATTGATTCTTCCTTTATTGTGTCTGTTGCGAAGGAATTTCATCCA    843
                     ||||.||.||.|||||.|||||.||.||.||||||||.||||||||.||.
RBAM_027560__    794 GCGGTATCGACTCTTCTTTTATCGTCTCAGTTGCGAAAGAATTTCACCCG    843

BSNT_04447___    844 AGCTTAAAAACATTCTCTGTCGGCTTTGAACAGCAGGGCTTCAGTGAGGT    893
                     |||.|.||||||||.||.|||||.|||||.||||||||||||||||||||
RBAM_027560__    844 AGCCTTAAAACATTTTCCGTCGGTTTTGAGCAGCAGGGCTTCAGTGAGGT    893

BSNT_04447___    894 TGATGTAGCGAAAGAAACGGCAGCGGCGCTGGGCATTGAAAATATCAGCA    943
                     |||.||||||||.||||||||.||.|||||.||.||||||||.|||||||
RBAM_027560__    894 TGACGTAGCGAAGGAAACGGCTGCCGCGCTCGGGATTGAAAACATCAGCA    943

BSNT_04447___    944 AAGTCATTTCGCCTGAGGAATACATGAATGAGCTTCCGAAGATCGTTTGG    993
                     ||||||||||.||||||||.||.|||||.|||||||||||.|||||.|||
RBAM_027560__    944 AAGTCATTTCTCCTGAGGAGTATATGAACGAGCTTCCGAAAATCGTCTGG    993

BSNT_04447___    994 CATTTTGATGACCCGCTTGCTGATCCGGCAGCGATTCCGTTGTACTTTGT   1043
                     ||.|||||||||||||||||.||||||||.||||||||.|||||||||||
RBAM_027560__    994 CACTTTGATGACCCGCTTGCAGATCCGGCGGCGATTCCTTTGTACTTTGT   1043

BSNT_04447___   1044 TGCAAAAGAAGCGAAAAAACATGTTACGGTTGCTTTATCAGGTGAAGGAG   1093
                     .||.||||||||||||||||||||.|||||.||.|||||.||.|||||.|
RBAM_027560__   1044 CGCGAAAGAAGCGAAAAAACATGTAACGGTCGCGTTATCCGGGGAAGGCG   1093

BSNT_04447___   1094 CGGATGAGCTCTTCGGCGGATATAACATTTACCGTGAACCGCTTTCGCTT   1143
                     ||||.|||||.||||||||.||.||.||||||||.|||||||||||||||
RBAM_027560__   1094 CGGACGAGCTGTTCGGCGGGTACAATATTTACCGCGAACCGCTTTCGCTT   1143

BSNT_04447___   1144 AAACCGTTTGAACGGATTCCGTCCGGCTTGAAAAAGATGCTTCTGCACGT   1193
                     ||||||||||||||.|||||||||||..|||||||.||||||||.||.||
RBAM_027560__   1144 AAACCGTTTGAACGCATTCCGTCCGGTCTGAAAAAAATGCTTCTTCATGT   1193

BSNT_04447___   1194 TGCTGCCGTTATGCCTGAAGGTATGAGAGGAAAGAGCCTGCTTGAG--CG   1241
                     .||..||||.|||||||||||.||||||||.||.||||| ||| ||  ||
RBAM_027560__   1194 GGCGTCCGTCATGCCTGAAGGAATGAGAGGGAAAAGCCT-CTT-AGTCCG   1241

BSNT_04447___   1242 CGGCTGTACTCCGCTTCAGGATCGTTATATCGGTAACGCGAAAATCTTTG   1291
                     ||||||.||.||||||.||||.||.|||||||||||.|||||.||.||||
RBAM_027560__   1242 CGGCTGCACACCGCTTGAGGAGCGCTATATCGGTAATGCGAAGATTTTTG   1291

BSNT_04447___   1292 AAGAGTCTGTCAAAAAGCAGCTGTTGAAGCATTATAATCCGAACCTTTCA   1341
                     |||||.|.||.||||||||||||.|.||.|||||.|||||..|.||||||
RBAM_027560__   1292 AAGAGCCCGTGAAAAAGCAGCTGCTCAAACATTACAATCCAGAGCTTTCA   1341

BSNT_04447___   1342 TATCGCGATGTGACGAAGACTTACTTTACAGAAAGCAGCTCGTACAGCGA   1391
                     ||.||.|||||.||||||.|.||||||||.||||||.|.||.||||||||
RBAM_027560__   1342 TACCGTGATGTCACGAAGCCGTACTTTACGGAAAGCCGTTCATACAGCGA   1391

BSNT_04447___   1392 TATCAACAAAATGCAGTATGTCGATATCCACACTTGGATGCGCGGCGACA   1441
                     .||.||.||||||||||||||.||.|||||.||.||||||||||||||||
RBAM_027560__   1392 CATTAATAAAATGCAGTATGTTGACATCCATACGTGGATGCGCGGCGACA   1441

BSNT_04447___   1442 TTTTGTTAAAGGCGGATAAAATGACGATGGCGAATTCTTTGGAACTGCGT   1491
                     |..||||||||||.||.||||||||||||||.||.||.|||||||||||.
RBAM_027560__   1442 TCCTGTTAAAGGCTGACAAAATGACGATGGCCAACTCATTGGAACTGCGC   1491

BSNT_04447___   1492 GTGCCGTTCTTGGATAAAGTCGTATTCGACGTCGCTTCAAAAATTCCTGA   1541
                     |||||||||.|.||||||||.||.||.|||||.|||||.||||||||.||
RBAM_027560__   1492 GTGCCGTTCCTTGATAAAGTTGTGTTTGACGTGGCTTCTAAAATTCCGGA   1541

BSNT_04447___   1542 TGAGCTGAAAACGAAGAACGGCACGACGAAGTATCTTCTTCGCAAAGCCG   1591
                     |||.|||||||||||.||||||||||||||.||.|||||.||||||||.|
RBAM_027560__   1542 TGAACTGAAAACGAAAAACGGCACGACGAAATACCTTCTGCGCAAAGCTG   1591

BSNT_04447___   1592 CTGAAGGAATTGTGCCTGAGCACGTATTAAACCGCAAAAAGCTTGGTTTC   1641
                     |||||||..|.||||||||.||.||..|.||||||||||||||.||.|||
RBAM_027560__   1592 CTGAAGGGGTAGTGCCTGATCATGTGCTTAACCGCAAAAAGCTCGGCTTC   1641

BSNT_04447___   1642 CCTGTACCGATCCGTCATTGGCTGAAAAACGAAATGAACGAATGGGTGCG   1691
                     |||||.||||||||.||.|||||||||||.|||||||||||||||||.||
RBAM_027560__   1642 CCTGTGCCGATCCGCCACTGGCTGAAAAATGAAATGAACGAATGGGTTCG   1691

BSNT_04447___   1692 GAATATTATTCAAGAAAGCCAAACGGATGCTTATATCCATAAGGATTATG   1741
                     .||.||.||||..|||||..||||.|||||||||||..|.||||||||||
RBAM_027560__   1692 CAACATCATTCGTGAAAGTGAAACAGATGCTTATATTGAAAAGGATTATG   1741

BSNT_04447___   1742 TCCTTCAGCTTCTTGAAGACCATTGTGCGGACAAGGCTGATAACAGCCGT   1791
                     |||||||||||||.|||||.||||||||.||||..||.||.||||||||.
RBAM_027560__   1742 TCCTTCAGCTTCTGGAAGATCATTGTGCCGACAGAGCGGACAACAGCCGC   1791

BSNT_04447___   1792 AAAATTTGGACTGTGCTAATCTTTATGATCTGGCACAGCATCAATATTGA   1841
                     |||||.|||||.|||||.|||||||||||||||||||||||||||.||||
RBAM_027560__   1792 AAAATCTGGACCGTGCTGATCTTTATGATCTGGCACAGCATCAATGTTGA   1841

BSNT_04447___   1842 AAAACGGTATA----TGCCTGAAGAGCTGAGCCATCAGCCTAAAGAAGTC   1887
                     ||||    |.|    ||||.||||||||||..||||||||.|||||||||
RBAM_027560__   1842 AAAA----AGACTGGTGCCGGAAGAGCTGAATCATCAGCCGAAAGAAGTC   1887

BSNT_04447___   1888 ATCTTTGTGTAA   1899
                     ||.||.||.|||
RBAM_027560__   1888 ATTTTCGTTTAA   1899


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