Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04449 and RBAM_027580

See Amino acid alignment / Visit BSNT_04449 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:57
# Commandline: needle
#    -asequence dna-align/BSNT_04449___pckA.1.9828.seq
#    -bsequence dna-align/RBAM_027580___pckA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04449___pckA-RBAM_027580___pckA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04449___pckA-RBAM_027580___pckA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04449___pckA
# 2: RBAM_027580___pckA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1600
# Identity:    1248/1600 (78.0%)
# Similarity:  1248/1600 (78.0%)
# Gaps:          32/1600 ( 2.0%)
# Score: 4811.0
# 
#
#=======================================

BSNT_04449___      1 ATGAACTCAGTTGATTTGACCGCTGATTTACAAGCCTTATTAACATGTCC     50
                     |||||.|.|||||||||.|||||.|||.|.|||||.|||.|..||.||||
RBAM_027580__      1 ATGAAATTAGTTGATTTAACCGCAGATCTTCAAGCATTACTTGCAAGTCC     50

BSNT_04449___     51 AAATGTGCGTCATAATTTATCTGCAGCACAGCTAACAGAAAAAGTCCTCT    100
                     .|||||||.||||||||||||.||..||.|.||.||.||||||||..||.
RBAM_027580__     51 GAATGTGCATCATAATTTATCGGCTCCAAAACTTACCGAAAAAGTGATCA    100

BSNT_04449___    101 CCCGAAACGAAGGCATTTTAACATCCACAGGTGCTGTTCGCGCGACAACA    150
                     .||||||.|||||.|...|.|||||.||.||.||.||.|||||.||.||.
RBAM_027580__    101 GCCGAAATGAAGGAACGCTGACATCAACGGGCGCCGTACGCGCCACCACC    150

BSNT_04449___    151 GGCGCTTACACAGGACGCTCACCTAAAGATAAATTCATCGTGGAGGAAGA    200
                     |||||.||.|||||.||.|||||||||||||||||.|||||....|||.|
RBAM_027580__    151 GGCGCATATACAGGCCGGTCACCTAAAGATAAATTTATCGTCCGTGAACA    200

BSNT_04449___    201 AAGCACGAAAAATAAGATCGATTGGGGCCCGGTGAATCAGCCCATTTCAG    250
                     ||||||..|||||.|.||.||||||||..|||||||||||||||||||.|
RBAM_027580__    201 AAGCACAGAAAATCAAATTGATTGGGGTGCGGTGAATCAGCCCATTTCTG    250

BSNT_04449___    251 AAGAAGCGTTTGAGCGGCTGTATACGAAAGTTGTCAGCTATTTAAAGGAG    300
                     ||||.||||||||...||||||..|.|||||.||||||||.|||||..||
RBAM_027580__    251 AAGAGGCGTTTGAAAAGCTGTACGCCAAAGTCGTCAGCTACTTAAAACAG    300

BSNT_04449___    301 CGAGATGAACTGTTTGTTTTCGAAGGATTTGCCGGAGCAGACGAGAAATA    350
                     ||.|||||||||||||||||.||||||||.||.|||||.||.||.|||||
RBAM_027580__    301 CGGGATGAACTGTTTGTTTTTGAAGGATTCGCGGGAGCGGATGAAAAATA    350

BSNT_04449___    351 CAGGCTGCCGATCACTGTCGTAAATGAGTTCGCATGGCACAATTTATTTG    400
                     |||.||.|||||.||.|||||||||||.||.||.||||||||||||||.|
RBAM_027580__    351 CAGACTCCCGATTACGGTCGTAAATGAATTTGCGTGGCACAATTTATTCG    400

BSNT_04449___    401 CGCGGCAGCTGTTTATCCGTCCGGA-----AGGAAA-TGATAAGAAAACA    444
                     ||||.||||||||||||.|.|||||     |.|||| .||.|.|.||   
RBAM_027580__    401 CGCGCCAGCTGTTTATCAGACCGGAGACGGATGAAAGAGACACGCAA---    447

BSNT_04449___    445 GTTGAGCAGCCGTTCACCATTCTTTCTGCTCCGCACTTCAAAGCGGATCC    494
                        |.||||||.|||||||||||.||.||||||||.||.|||||.|||||
RBAM_027580__    448 ---GCGCAGCCTTTCACCATTCTCTCAGCTCCGCATTTTAAAGCAGATCC    494

BSNT_04449___    495 AAAAACAGACGGCACTCATTCCGAAACGTTTATTATTGTCTCTTTCGAAA    544
                     ..|.||.||||||||.|||||.|||||.|||||.||||||||||||||||
RBAM_027580__    495 GGAGACGGACGGCACGCATTCGGAAACATTTATCATTGTCTCTTTCGAAA    544

BSNT_04449___    545 AGCG-GACAATTTTAATCGGCGGAACTGAGTATGCCGGTGAAATGAAGAA    593
                     |||| |.| ||||||||||||||.||.||.||.|||||.||||||||.||
RBAM_027580__    545 AGCGCGTC-ATTTTAATCGGCGGCACCGAATACGCCGGAGAAATGAAAAA    593

BSNT_04449___    594 GTCCATTTTCTCCATTATGAATTTCCTGCTGCCTGAA--AGAGATATTTT    641
                     .||.||.||||||||||||||.||||||||.|| |.|  || |||||..|
RBAM_027580__    594 ATCAATATTCTCCATTATGAACTTCCTGCTTCC-GCAGCAG-GATATACT    641

BSNT_04449___    642 ATCTATGCACTGCTCCGCCAATGTCGGTGAAAAAGGCGATGTCGCCCTTT    691
                     ..|.|||||||||||.||||||||||||||||||||||||||||||||.|
RBAM_027580__    642 GCCGATGCACTGCTCAGCCAATGTCGGTGAAAAAGGCGATGTCGCCCTGT    691

BSNT_04449___    692 TCTTCGGACTGTCAGGAACAGGAAAGACCACCCTGTCGGCAGATGCTGAC    741
                     |.|||||.||.||.||.|||||.||.||.||.||.||.||.|||||.|||
RBAM_027580__    692 TTTTCGGCCTTTCCGGCACAGGGAAAACGACGCTTTCAGCCGATGCGGAC    741

BSNT_04449___    742 CGCAAGCTGATCGGTGACGATGAACATGGCTGGTCTGATACAGGCGTCTT    791
                     |||||.||||||||.||.||.||.||.||||||||.|||.|.|||||.||
RBAM_027580__    742 CGCAAACTGATCGGCGATGACGAGCACGGCTGGTCAGATTCCGGCGTTTT    791

BSNT_04449___    792 TAATATTGAAGGCGGGTGCTACGCTAAGTGCATTCATTTAAGCGAGGAAA    841
                     .||.|||||||||||.||.||||||||.||.||..||.|.||||||||||
RBAM_027580__    792 CAACATTGAAGGCGGATGTTACGCTAAATGTATCAATCTGAGCGAGGAAA    841

BSNT_04449___    842 AGGAGCCGCAAATCTTTAACGCGATCCGCTTCGGGTCTGTTCTCGAAAAT    891
                     |.||.|||||.||.|||...|||||||||||||||||||||||.||.|||
RBAM_027580__    842 AAGAACCGCAGATTTTTCGTGCGATCCGCTTCGGGTCTGTTCTTGAGAAT    891

BSNT_04449___    892 GTCGTTGTGGATGAAGATACACGCGAAGCCAATTATGATGATTCCTTCTA    941
                     |||||..|.||||||.|.||..|.|||||..||||.||..||||||||||
RBAM_027580__    892 GTCGTGCTTGATGAAAAAACGGGTGAAGCGGATTACGACAATTCCTTCTA    941

BSNT_04449___    942 TACTGAAAACACGCGGGCAGCTTACCCGATTCATATGATTGACAACATCG    991
                     .||.||||||||..|.||.||.||.||||||.|.|||||.|.|||.||||
RBAM_027580__    942 CACGGAAAACACAAGAGCCGCATATCCGATTGAGATGATCGGCAATATCG    991

BSNT_04449___    992 TGACTCCAAGCATGGCCGGCCATCCGTCA-GCAATTGTATTTTTGACGGC   1040
                     ||...||.|||||.|||||||||||| || ||.||.||.|||||.|||||
RBAM_027580__    992 TGCAGCCGAGCATTGCCGGCCATCCG-CAGGCGATCGTCTTTTTAACGGC   1040

BSNT_04449___   1041 TGATGCCTTCGGAGTCCTGCCGCCGATCAGCAAACTAACGAAGGAGCAGG   1090
                     .||.||||||||.||.||.||.||||||||||||||.||||||||.||||
RBAM_027580__   1041 GGACGCCTTCGGTGTGCTCCCTCCGATCAGCAAACTGACGAAGGAACAGG   1090

BSNT_04449___   1091 CCATGTACCATTTCTTGAGCGGTTACACGAGTAAGCTCGCCGGAACCGAA   1140
                     |.|||||.||.|||||.|||||.|||||.|||||.|||||.||||||||.
RBAM_027580__   1091 CGATGTATCACTTCTTAAGCGGGTACACCAGTAAACTCGCGGGAACCGAG   1140

BSNT_04449___   1141 CGTGGTGTCACGTCTCCTGAAACGACGTTCTCTACATGCTTCGGCTCACC   1190
                     ||.||.||.||.|||||..|||||||.|||||.||.||||||||.|||||
RBAM_027580__   1141 CGCGGCGTGACATCTCCGCAAACGACTTTCTCCACGTGCTTCGGTTCACC   1190

BSNT_04449___   1191 GTTCCTGCCGCTTCCTGCTCACGTCTATGCTGAAATGCTC-GGCAAAAAG   1239
                     ||||||.||||||||.||.||.||.|||||.||||||||| ||||.||| 
RBAM_027580__   1191 GTTCCTTCCGCTTCCGGCGCATGTATATGCCGAAATGCTCGGGCATAAA-   1239

BSNT_04449___   1240 ATCGATGAACACGGGGCAGACGTTTTCTTAGTCAATACCGGCTGGACCGG   1289
                     |||||.||||||||.|...|.||.|||.|.|||||.||.|||||||||||
RBAM_027580__   1240 ATCGACGAACACGGCGTTCAAGTCTTCCTGGTCAACACAGGCTGGACCGG   1289

BSNT_04449___   1290 GGGCGGCTACGGCACAGGCGAACGAATGAAGCTTTCTTACACTAGAGCAA   1339
                     .||.||.|||||....||.|||||.|||||.|||||.||.||.|||||.|
RBAM_027580__   1290 CGGAGGGTACGGAGTCGGAGAACGGATGAAACTTTCGTATACAAGAGCGA   1339

BSNT_04449___   1340 TGGTCAAAGCAGCGATTGAAGG-----TAAATTAGAGGATGCTGAAATGA   1384
                     |||||||.||.||.||||||||     |.||..|||     ||||.||||
RBAM_027580__   1340 TGGTCAAGGCCGCTATTGAAGGCAGACTGAACCAGA-----CTGACATGA   1384

BSNT_04449___   1385 TAACTGACGATATTTTCGGCCTGCACATTCCGGCCCATGTTCCTGGCGTT   1434
                     ...|.|||...|||||||||||||.||.|||.|..||||||||.||||||
RBAM_027580__   1385 CGGCAGACAGCATTTTCGGCCTGCGCAGTCCCGTTCATGTTCCGGGCGTT   1434

BSNT_04449___   1435 CCTGATCATATCCTTCAGCCTGAAAACACGTGGACCAACAAGGAAGAATA   1484
                     ||.|||.|..|.|||||||||||||||||.||||.|.|.||..|||.|||
RBAM_027580__   1435 CCGGATGAAGTTCTTCAGCCTGAAAACACATGGAGCGATAAACAAGCATA   1484

BSNT_04449___   1485 CAAAGAAAAGGCAGTCTACCTTGCAAATGAATTCAAAGAGAACTTTAAAA   1534
                     |||.|||||.||..|.|...|.||.|||||.||.|||||.||||||||||
RBAM_027580__   1485 CAACGAAAAAGCGCTGTTTTTAGCCAATGAGTTTAAAGAAAACTTTAAAA   1534

BSNT_04449___   1535 AGTTCGCACATACCGATGCCATCGCCCAGGCAGGCGGCCCTCTCGTATAA   1584
                     ||||..|.|||.|.||..|.||.|||.|.||.|||||.||||||||.|||
RBAM_027580__   1535 AGTTTTCCCATGCGGACTCGATTGCCAAAGCCGGCGGACCTCTCGTGTAA   1584


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