Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04563 and RBAM_028140

See Amino acid alignment / Visit BSNT_04563 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:01
# Commandline: needle
#    -asequence dna-align/BSNT_04563___yuaD.1.9828.seq
#    -bsequence dna-align/RBAM_028140___yuaD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04563___yuaD-RBAM_028140___yuaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04563___yuaD-RBAM_028140___yuaD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04563___yuaD
# 2: RBAM_028140___yuaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 606
# Identity:     423/606 (69.8%)
# Similarity:   423/606 (69.8%)
# Gaps:          51/606 ( 8.4%)
# Score: 1457.0
# 
#
#=======================================

BSNT_04563___      1 ATGTGGAAGCGGATGACTGCAAAAGCGGAAGGCTTATATATCGCAGAAAC     50
                     ||||||||.||.||.||.|||||..||||||||.|||||||.||.||.||
RBAM_028140__      1 ATGTGGAAACGCATAACAGCAAAGACGGAAGGCGTATATATAGCGGATAC     50

BSNT_04563___     51 AGAAAGCTTCGTAACAAAGCAAATGGACAAGCTTGATTTTGATTATGGCG    100
                     .|||...||.||.||.||..|.||||||||||||..|...||.||.||||
RBAM_028140__     51 CGAACAATTTGTTACCAAAAAGATGGACAAGCTTCGTACGGAATACGGCG    100

BSNT_04563___    101 GCATCCCCGGCGACTTGCATTTTGGCCTGACCAAAAAAGCGGGAGCCAGA    150
                     |..|.|||||.|||.|||||||.||.|||||.|||||.||.||.||..|.
RBAM_028140__    101 GGTTTCCCGGTGACCTGCATTTCGGACTGACAAAAAAGGCCGGCGCGCGT    150

BSNT_04563___    151 GAACCAATGTTTTCAAGAGGGACTGAAATTTTCAACCGCAGACAAATTTC    200
                     ||.||.||||.|..||||||.||.||||||||.|||||.|||||.|||||
RBAM_028140__    151 GAGCCGATGTATGAAAGAGGAACAGAAATTTTTAACCGGAGACAGATTTC    200

BSNT_04563___    201 AATTGTTTCAATAGAGGAATGCAACGAAATCGCTTTAAAAATGGGAGTGC    250
                     |||.||.||.||.||||||||..|.||.||.||....||.|||||     
RBAM_028140__    201 AATCGTGTCCATGGAGGAATGTGATGACATTGCGGAGAAGATGGG-----    245

BSNT_04563___    251 CGAGA--------ATTTTGCCGGAATGGCTCGGGGCGAATGTGGCAGTCA    292
                        ||        ||.||.||.|||||||||||.||.||..|.|||.|||
RBAM_028140__    246 ---GATTTCTCATATATTTCCCGAATGGCTCGGCGCTAACATCGCAATCA    292

BSNT_04563___    293 GCGGTATGCCAGATCTTACTTCATTAAAAGAAGGAAGCCGGATTATTTTT    342
                     |||||.|..|.|..||.||..|..|.||||||||||||.|.||.||.|||
RBAM_028140__    293 GCGGTTTTTCTGCACTGACGCCGCTTAAAGAAGGAAGCAGAATGATATTT    342

BSNT_04563___    343 CCGAGCGGAGCGGCTCTGCTGTGTGAGGGCGAAAATGATCCGTGTATCCA    392
                     ||.|||||.|||.|||||.||||.|||||.||||||||||||||.||.||
RBAM_028140__    343 CCAAGCGGTGCGTCTCTGTTGTGCGAGGGAGAAAATGATCCGTGCATTCA    392

BSNT_04563___    393 GCCGGGAGAAGTCATTCAGTCCTATTATCCGGACAAGCCGAAGCTGACGC    442
                     ||||||||||||||||||.||||.|||||||||..||||.||.||  |||
RBAM_028140__    393 GCCGGGAGAAGTCATTCAATCCTTTTATCCGGATCAGCCAAAACT--CGC    440

BSNT_04563___    443 --CGGCTTTCGTCCGCCACGCACTGGGCATTAGAGGGATTGTCTGTATTG    490
                       ||||.||.||..|.|||||..||||||..|||||.|||||||||||||
RBAM_028140__    441 CGCGGCGTTTGTGAGGCACGCGATGGGCAGAAGAGGAATTGTCTGTATTG    490

BSNT_04563___    491 TGGAGAGACCTGGTGCTGTTTACACAGGTGATG--------AAATAGAAG    532
                     |.||..|.||.||||...|.|.|||.||.||||        |        
RBAM_028140__    491 TTGAACGCCCGGGTGACATATGCACGGGCGATGCGGTCACCA--------    532

BSNT_04563___    533 TTCATTCCTATCA--------GCGAAAAGTCAAACGAAAAGC-AGAAAGG    573
                     |.|||||.|||.|        |||..|||  |||  ||||.| ||||  |
RBAM_028140__    533 TCCATTCTTATGAACCGAAACGCGCCAAG--AAA--AAAATCGAGAA--G    576

BSNT_04563___    574 GTCTGA    579
                     ||||||
RBAM_028140__    577 GTCTGA    582


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