Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_04575 and RBAM_028200

See Amino acid alignment / Visit BSNT_04575 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:01
# Commandline: needle
#    -asequence dna-align/BSNT_04575___yubE.1.9828.seq
#    -bsequence dna-align/RBAM_028200___yubE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04575___yubE-RBAM_028200___yubE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04575___yubE-RBAM_028200___yubE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04575___yubE
# 2: RBAM_028200___yubE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 884
# Identity:     608/884 (68.8%)
# Similarity:   608/884 (68.8%)
# Gaps:          73/884 ( 8.3%)
# Score: 2011.0
# 
#
#=======================================

BSNT_04575___      1 ATGGCCCGTAAAAAACTTA--AAAAACGTAAA---CTCTTGATTTCACTA     45
                     |||       |||||...|  |||.||..|||   ..||||..|.|   .
RBAM_028200__      1 ATG-------AAAAAGAAAGCAAAGACCAAAAGGGGGCTTGGGTGC---C     40

BSNT_04575___     46 TTTTTCCTTGTATC-----GATTCCG-CTAGCTCTGTT--------TGTT     81
                     |||||.| ||||||     .||||.| .||..||||.|        ||||
RBAM_028200__     41 TTTTTGC-TGTATCTCTTATATTCGGATTATTTCTGGTATCAATGGTGTT     89

BSNT_04575___     82 TTAGCGACAACTTTATCAAAACCGATTGAAATATCCAAAGAAA------C    125
                     ||.|    ||.||.||        |.|||     |..||||||      |
RBAM_028200__     90 TTCG----AAATTCAT--------AGTGA-----CGGAAGAAAAACCGCC    122

BSNT_04575___    126 TGAAGAAATCGATGAACAGCAAGTATTTATAGACAGTCTGTCCGGACATG    175
                     ||||||..|.||.||.|||||.||.|||||.|||||.||.|||||.||||
RBAM_028200__    123 TGAAGAGGTGGACGAGCAGCAGGTCTTTATTGACAGCCTTTCCGGGCATG    172

BSNT_04575___    176 CCCAAATTTTGTATGAAAAATACCATGTTCTCCCCAGCATCACAATTGCT    225
                     |.||.|||||.|||||.|||||.|||||.||.||.||||||||..|.||.
RBAM_028200__    173 CTCAGATTTTATATGAGAAATATCATGTCCTTCCGAGCATCACCCTCGCA    222

BSNT_04575___    226 CAGGCCATTCTCGAATCGGACTGGGGGAACAGTGAACTGGCTGCTAAGGC    275
                     |||||||||||||||||||||||||||||||||||.||.||.|..||.||
RBAM_028200__    223 CAGGCCATTCTCGAATCGGACTGGGGGAACAGTGAGCTTGCGGGGAAAGC    272

BSNT_04575___    276 CAACAACCTTTTTGGCGTAAAAGGGAATTATAAAGGCCATCATGTCACGA    325
                     ...||||||.||.||.||||||||..||||||||||..|.||.|||||||
RBAM_028200__    273 GCGCAACCTGTTCGGTGTAAAAGGTGATTATAAAGGAAAACACGTCACGA    322

BSNT_04575___    326 TGGAAACGGACGAAGTTGAAAAAGGGAAAAGAAAAACCATTCGCGCGAAG    375
                     ||.|||||||.|||.||||||||||.|||.|||||||.|||||.||.||.
RBAM_028200__    323 TGAAAACGGATGAATTTGAAAAAGGAAAACGAAAAACGATTCGGGCAAAA    372

BSNT_04575___    376 TTTCGAAAATACAGCACGTTTTTTGAATCTATGGATGATCACGCCCAATT    425
                     ||.||.|||||||||||||||||||||||.||||||||.||.|||.||||
RBAM_028200__    373 TTCCGTAAATACAGCACGTTTTTTGAATCAATGGATGACCATGCCAAATT    422

BSNT_04575___    426 GTTCGTCCGTGGCACATCGTGGAATAAAAAGAAGTATAAACCGGTGCTTG    475
                     .||.|||...||.||.||.||||||||||||||||||||.||.||..|||
RBAM_028200__    423 ATTTGTCAACGGAACGTCTTGGAATAAAAAGAAGTATAAGCCTGTCATTG    472

BSNT_04575___    476 AGGCAGGGAATTATAAGGAAGCGGCAACCGCCCTGCAAACATCAGGATAT    525
                     |.||.|..||||||||...||||||..|.|||||.||||.|||.||.||.
RBAM_028200__    473 AAGCGGACAATTATAAAACAGCGGCGGCTGCCCTTCAAAAATCCGGCTAC    522

BSNT_04575___    526 GCTACAGACCCTGACTACGCTGACAAAATCAGCGCTATTGTGGAAAAATA    575
                     ||.||||||||.|.|||.|||||.|||||.|..|.|.|..|.||||..||
RBAM_028200__    523 GCCACAGACCCCGGCTATGCTGAAAAAATTAAAGATGTCATAGAAACCTA    572

BSNT_04575___    576 CGATTTAGATGAGTACGATGAGGTAAATCCATCCCTC----AAATCTGTG    621
                     ..||.|..||||.||.||    ..|||||.||.||||    |||.|.||.
RBAM_028200__    573 TAATCTGAATGAATATGA----CAAAATCAATGCCTCTCTTAAAGCAGTT    618

BSNT_04575___    622 GATTTAAACGCCTCTATTAAAGACAGTGCCGTTCAAGACGTATGGTCCAA    671
                     |||.|.||.|.|.|.||.||||||...|||.||.|||||||.||||||||
RBAM_028200__    619 GATATGAAAGGCGCCATCAAAGACCACGCCATTGAAGACGTGTGGTCCAA    668

BSNT_04575___    672 GCCCTCTACTGATGATCGG---TCCATAAGGCTTACCTCTGCCCAA---T    715
                     |||.||.|   |.||.|||   ||.||.|..||..|.||.||.|||   |
RBAM_028200__    669 GCCGTCGA---AAGAGCGGCATTCTATTAAACTGGCATCGGCGCAAAAGT    715

BSNT_04575___    716 CTTACGTCGGCAAAGACATAAAGGTTGTGTCTAAAAAACAGAAAGGCCAG    765
                      ||||  ||||.|..|.||.||.||.||.|||.|||||||.||.||..|.
RBAM_028200__    716 -TTAC--CGGCCAGCATATTAAAGTCGTATCTGAAAAACAAAACGGAGAA    762

BSNT_04575___    766 TCTGTATGGTACCAATTCCAAATCAATGATAAACTTATCGGCTGGATTGA    815
                     ||.||.|||||||||.|.|||.|.||.|||.|.||.|||||||||.||||
RBAM_028200__    763 TCCGTCTGGTACCAAATTCAAGTGAAAGATGAGCTGATCGGCTGGGTTGA    812

BSNT_04575___    816 TGATTCAGCTGTTGAAATAAAGGAGGCAACCTAA    849
                     ..|..|.||.||..|..|||..||.|.|||.|||
RBAM_028200__    813 CCAAACCGCCGTCCAGTTAAGTGAAGAAACATAA    846


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04575 and RBAM_028200

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
