Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03890 and RBAM_028350

See Amino acid alignment / Visit BSNT_03890 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:11
# Commandline: needle
#    -asequence dna-align/BSNT_03890___yrpB.1.9828.seq
#    -bsequence dna-align/RBAM_028350___yrpB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03890___yrpB-RBAM_028350___yrpB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03890___yrpB-RBAM_028350___yrpB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03890___yrpB
# 2: RBAM_028350___yrpB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1142
# Identity:     669/1142 (58.6%)
# Similarity:   669/1142 (58.6%)
# Gaps:         208/1142 (18.2%)
# Score: 1681.5
# 
#
#=======================================

BSNT_03890___      1 ATGAATGAATTTATGAAGAAG----TTTTCCTTAACAAAACCGATTATTC     46
                     ||||.|||.|..|||    ||    ||.||.||||||||.||..|.||||
RBAM_028350__      1 ATGAGTGAGTGGATG----AGTGCATTATCATTAACAAAGCCCGTCATTC     46

BSNT_03890___     47 AAGCTCCAATGGCTGGCGGTATTACAACGCCCCGACTTGCATCTGCAGTT     96
                     |.||.||.|||||.|||||..|....|||||.||.||.||.||.||.||.
RBAM_028350__     47 AGGCGCCGATGGCCGGCGGGCTGGTCACGCCGCGTCTGGCTTCGGCGGTA     96

BSNT_03890___     97 TCGAATCAAGGTGCTCTTGGCAGCTTAGCATCGGGGTATCTTACGCCAGA    146
                     ||.|||.||||.||.||.||.|||.|.||.||.||     .||||.|||.
RBAM_028350__     97 TCAAATGAAGGGGCGCTCGGAAGCCTCGCTTCAGG-----ATACGTCAGC    141

BSNT_03890___    147 CC-----TGCTAGAACAACAGATAAAAGAAATGTTTGAGCTGACAGA-CG    190
                     ||     .|||.|||.|||||.|.|..||.|||...||||||||.|| ||
RBAM_028350__    142 CCGCAAGCGCTTGAAAAACAGCTTATCGAGATGAAAGAGCTGACGGACCG    191

BSNT_03890___    191 CTCCTTTTCAAATTAATGTGTTTGTTCCGCTAGGTCTAG--AGATGCCAC    238
                     |||| ||||||.|.|||.|.||.||.||| .||| ..||  |||||   |
RBAM_028350__    192 CTCC-TTTCAAGTAAATCTTTTCGTCCCG-GAGG-AAAGACAGATG---C    235

BSNT_03890___    239 CAGAAGATCAGA-----TTAAAAAGTGGAAAGAAAACATACCGTTAGCTA    283
                     |.||.|  |.||     ||.||||.|||||||....|||.|||...||.|
RBAM_028350__    236 CTGAGG--CGGAACTTGTTGAAAAATGGAAAGCCCGCATTCCGAGGGCAA    283

BSNT_03890___    284 ATCAAGTAAATCAATTCAC--ATCTGTACAAGAAGAGTGGGATGACTTCT    331
                     |..|.|..||.|..|||.|  |||||  .|||||||.|||.||||.|||.
RBAM_028350__    284 AAGACGCCAAGCCGTTCTCTGATCTG--AAAGAAGAATGGAATGATTTCG    331

BSNT_03890___    332 ATCAAAAAATTGA---TCTAAT---TTTAAAATATAAG--GTTAAGGCTT    373
                     |..|||||...||   |||.||   |        ||.|  ||.||.||.|
RBAM_028350__    332 AGGAAAAAGCGGAGCTTCTGATCCGT--------TACGGAGTCAAAGCGT    373

BSNT_03890___    374 GCTCATTCACTTTTGATCTGCCGCCTGAAG--ACGCAGTAAAGGAGCT--    419
                     |.||||||||.||.|..||||||||.||||  |||..|.|||  ||||  
RBAM_028350__    374 GTTCATTCACCTTCGGCCTGCCGCCGGAAGAAACGGCGGAAA--AGCTGA    421

BSNT_03890___    420 --AAAAACCGCTGGATGCTGTTTAATAGGAACCGCTTCAAC-----AGTA    462
                       ||||.|.|.||..|.||.|    |.||.||.||..||||     ||  
RBAM_028350__    422 AGAAAAGCGGTTGTTTCCTTT----TCGGCACGGCGACAACGCCGGAG--    465

BSNT_03890___    463 GAA--GAAG--CATTGTTAATGGAAGAACGGGGAATGGATATAGTAGTCC    508
                     |||  ||||  |.||       ||.||||||||.|||||....||..|.|
RBAM_028350__    466 GAAGCGAAGGCCTTT-------GAGGAACGGGGGATGGACGCCGTTATTC    508

BSNT_03890___    509 TTCAAGGAAGTGAAGCCGGTGGACATCGCGGAGCATTCTTACC--TTCCA    556
                     ||||.||||..||||||||.|||||||||||..|.||..|.||  ||  |
RBAM_028350__    509 TTCAGGGAATAGAAGCCGGCGGACATCGCGGGTCGTTTCTGCCGGTT--A    556

BSNT_03890___    557 AAGGTGAATCTGCCGTAGGTTTAATGGCTCTGATTCCACAAGCAGCAGAT    606
                     ||||.|||.|.||..|.||..|.|||||.||||||||.||.||...|||.
RBAM_028350__    557 AAGGAGAACCGGCTCTCGGCCTTATGGCGCTGATTCCGCAGGCTAAAGAC    606

BSNT_03890___    607 GCACTGAGCGTACCTGTCATAGCTGCTGGGGGAATGATAGACCATAGAGG    656
                     ||.||||...|.||.||.||.||.||.||.||.||..|.||||...|.||
RBAM_028350__    607 GCGCTGAATATCCCGGTGATTGCGGCAGGCGGCATTTTTGACCGCCGCGG    656

BSNT_03890___    657 AGTAAAAGCAGCTTTAACCC------TTGGAGCCCAAGGCGTTCAAATCG    700
                     .||..|.||.|      |||      |.||.||..|.|||||||||.|.|
RBAM_028350__    657 CGTGCAGGCGG------CCCGATGTTTGGGTGCGGACGGCGTTCAAGTAG    700

BSNT_03890___    701 GTTCTGCCTTTTTAATTTGTCACGAGAGTAACG-CACATCCAGTACAT-A    748
                     |..|..|.|||.|..|||||.|.||.||.|.|| |.|| ||.|.|.|| |
RBAM_028350__    701 GAACACCGTTTCTCCTTTGTGAAGAAAGCAGCGCCTCA-CCGGCATATCA    749

BSNT_03890___    749 AACAGAAAATACTAGAAGCAAACGAAGCAGATACAAAGCTTACGACATTA    798
                     ||.||..|.|.| .|||.||||.|.|||.||.||...|||.||.||..|.
RBAM_028350__    750 AAAAGCCATTGC-CGAATCAAAAGGAGCCGACACGCGGCTGACCACCCTG    798

BSNT_03890___    799 TTTTCAGGTAAAGAGGCCAGAGGAATCGTAAATAAATGGATGGAAGAAAA    848
                     |||||.||.|||.||||..|.||||||||.|||.|.|..|||        
RBAM_028350__    799 TTTTCGGGAAAACAGGCGCGGGGAATCGTGAATCAGTTCATG--------    840

BSNT_03890___    849 AGAACAGTTTGA----GAC-----ACAAACCCTTCCGTACCCTTATCAAA    889
                     |.|||| |.|||    |||     |.||||.||.||.||.||....||.|
RBAM_028350__    841 AAAACA-TATGAAGCTGACGAGGGAAAAACGCTGCCTTATCCGCTGCATA    889

BSNT_03890___    890 ATACACTAACGAAGGCAATGAGACAGCAGGCTTCACTTCAAAATAACCAT    939
                     ||||.||.||.|||.|.|||.|...|||.||..|   |||          
RBAM_028350__    890 ATACGCTGACAAAGCCGATGCGCGGGCACGCGGC---TCA----------    926

BSNT_03890___    940 GATCAG--------------ATGTCTTTATGGGCAGG-------------    962
                      |||||              ||||||||||||||.||             
RBAM_028350__    927 -ATCAGGAGACGCGGAGTATATGTCTTTATGGGCCGGCCAGTCCGCCGCG    975

BSNT_03890___    963 -----TCAAGGGATACGGTCATTGAC-TGAGGAAA---TTTCGGTTAAGC   1003
                          |.|||||   |.|.||  ||| |||  |||   |||.||  ||| 
RBAM_028350__    976 AAACTTGAAGGG---CCGACA--GACGTGA--AAACCGTTTTGG--AAG-   1015

BSNT_03890___   1004 AGCTTTTAAATCAGCTTTGCCAAGAAGAT-ATAAAAATATAG   1044
                             |||    |.|||.|     || ||||        
RBAM_028350__   1016 --------AAT----TGTGCGA-----ATCATAA--------   1032


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.