Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03890 and RBAM_028350

See DNA alignment / Visit BSNT_03890 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:11
# Commandline: needle
#    -asequence pep-align/BSNT_03890___yrpB.1.9828.seq
#    -bsequence pep-align/RBAM_028350___yrpB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03890___yrpB-RBAM_028350___yrpB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03890___yrpB-RBAM_028350___yrpB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03890___yrpB
# 2: RBAM_028350___yrpB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 347
# Identity:     204/347 (58.8%)
# Similarity:   260/347 (74.9%)
# Gaps:           4/347 ( 1.2%)
# Score: 1066.0
# 
#
#=======================================

BSNT_03890___      1 MNEFMKKFSLTKPIIQAPMAGGITTPRLASAVSNQGALGSLASGYLTPDL     50
                     |:|:|...|||||:||||||||:.||||||||||:||||||||||::|..
RBAM_028350__      1 MSEWMSALSLTKPVIQAPMAGGLVTPRLASAVSNEGALGSLASGYVSPQA     50

BSNT_03890___     51 LEQQIKEMFELTDAPFQINVFVPLGLEMPPEDQIKKWKENIPLANQVNQF    100
                     ||:|:.||.||||..||:|:|||...:||..:.::|||..||.|.....|
RBAM_028350__     51 LEKQLIEMKELTDRSFQVNLFVPEERQMPEAELVEKWKARIPRAKDAKPF    100

BSNT_03890___    101 TSVQEEWDDFYQKIDLILKYKVKACSFTFDLPPEDAVKELKTAGCCLIGT    150
                     :.::|||:||.:|.:|:::|.||||||||.||||:..::||.:||.|.||
RBAM_028350__    101 SDLKEEWNDFEEKAELLIRYGVKACSFTFGLPPEETAEKLKKSGCFLFGT    150

BSNT_03890___    151 ASTVEEALLMEERGMDIVVLQGSEAGGHRGAFLPSKGESAVGLMALIPQA    200
                     |:|.|||...||||||.|:|||.|||||||:|||.|||.|:|||||||||
RBAM_028350__    151 ATTPEEAKAFEERGMDAVILQGIEAGGHRGSFLPVKGEPALGLMALIPQA    200

BSNT_03890___    201 ADALSVPVIAAGGMIDHRGVKAALTLGAQGVQIGSAFLICHESNAHPVHK    250
                     .|||::|||||||:.|.|||:||..|||.|||:|:.||:|.||:|.|.::
RBAM_028350__    201 KDALNIPVIAAGGIFDRRGVQAARCLGADGVQVGTPFLLCEESSASPAYQ    250

BSNT_03890___    251 QKILEANEADTKLTTLFSGKEARGIVNKWMEEKEQFETQTLPYPYQNTLT    300
                     :.|.|:..|||:||||||||:||||||::|:..|..|.:|||||..||||
RBAM_028350__    251 KAIAESKGADTRLTTLFSGKQARGIVNQFMKTYEADEGKTLPYPLHNTLT    300

BSNT_03890___    301 KAMRQQASLQNNHDQMSLWAGQGIRSLTEEISVKQLLNQLCQEDIKI    347
                     |.||..|:...:.:.|||||||....|.....||.:|.:||:.    
RBAM_028350__    301 KPMRGHAAQSGDAEYMSLWAGQSAAKLEGPTDVKTVLEELCES----    343


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