Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04664 and RBAM_028770

See Amino acid alignment / Visit BSNT_04664 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:08
# Commandline: needle
#    -asequence dna-align/BSNT_04664___comP.1.9828.seq
#    -bsequence dna-align/RBAM_028770___comP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04664___comP-RBAM_028770___comP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04664___comP-RBAM_028770___comP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04664___comP
# 2: RBAM_028770___comP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2510
# Identity:    1610/2510 (64.1%)
# Similarity:  1610/2510 (64.1%)
# Gaps:         406/2510 (16.2%)
# Score: 4849.0
# 
#
#=======================================

BSNT_04664___      1 --------ATGTACAGATA--TATTAACGTCTATAAATATTTGTCTCTAG     40
                             ||.||.|.|||  ||||....|.|||.|||.||..||   ||
RBAM_028770__      1 ATGAAGTTATCTAAAAATACGTATTCCATTTTATTAATTTTACTC---AG     47

BSNT_04664___     41 TTTTTATCATTTTAAGTTTTATTTATGTTATATACCTCTCGTATAGCTTT     90
                     .||.|.|.||.||   ||.||||||..|||||||..|   |||.|     
RBAM_028770__     48 CTTGTCTTATATT---TTCTATTTAACTTATATAAAT---GTAAA-----     86

BSNT_04664___     91 GCTTTTAACATCTTCGTAGG------TGCGGATGTAAAGATAA-ATGAA-    132
                          |||..|.||.|||||      .||..||||.|  |||| |.||| 
RBAM_028770__     87 -----TAATTTATTTGTAGGAGCCACCGCAAATGTTA--ATAATAAGAAT    129

BSNT_04664___    133 CAGGGTAAGTTAGAGGTCACCAATGTTTTAGATTATACAGAT-GAATATT    181
                     ||    ||  |||||.|.|||||.||.|.||||||.||| || |.|||||
RBAM_028770__    130 CA----AA--TAGAGATTACCAAAGTATCAGATTACACA-ATGGCATATT    172

BSNT_04664___    182 ATTCATGTGTGAAAAAGGGAGATATCATTCTTGAAGTAAATGGGGAGAAA    231
                     ||.|..||||.|||||.||.||.||..|..||.||.|.|||..|.|.||.
RBAM_028770__    173 ATGCTGGTGTTAAAAAAGGTGACATTGTAATTAAAATTAATCAGAATAAG    222

BSNT_04664___    232 GGCAGTG-------ATATTCA-----------ATTAAAAAGTGGAAGATT    263
                     .||..||       |.|||.|           |||.||||..|.||    
RBAM_028770__    223 AGCGTTGAACCAAAAGATTTAAAACAAAATACATTGAAAAACGTAA----    268

BSNT_04664___    264 GGTCAAT----GTAGAAAGTTTAAT-TGTTGAGAGAGATAATAAATCATT    308
                     ||||.||    ||.|||||    || ||.|||.|.||            |
RBAM_028770__    269 GGTCTATGACAGTTGAAAG----ATCTGGTGAAATAG------------T    302

BSNT_04664___    309 TCATTTACAAAATGTAAGCCTAATCAGTGAAGAAAATTTATTTATGTATC    358
                     |.||.|..|||||.||||..||.|.||||||||.||.||||||.|.|||.
RBAM_028770__    303 TGATCTGAAAAATTTAAGTTTATTAAGTGAAGACAACTTATTTGTTTATT    352

BSNT_04664___    359 TCATTCCTGTAATATCTTATTCAATCTGT-----TTATTTTGTATATTTT    403
                     |.||.|||||  |||.||.|||  |.|||     ||| .||||||..|..
RBAM_028770__    353 TAATACCTGT--TATTTTTTTC--TTTGTATGCCTTA-GTTGTATTATCC    397

BSNT_04664___    404 TTATTTATAGAATAAATAA--AGTAAGAAAATCAACTTCTGCTTATATTT    451
                     ||||||..|.|||.|||||  ||.|||  |.|||..|||.||||.|||.|
RBAM_028770__    398 TTATTTTAAAAATTAATAAGGAGCAAG--ATTCAGTTTCAGCTTTTATAT    445

BSNT_04664___    452 TAATTTTATTTTT----GTTATTTGTATCAGTAGCGTATGTAAGTGCATG    497
                     |.||..|.|||||    ..||.|.|||    ||||.|||||||||||..|
RBAM_028770__    446 TGATCATCTTTTTACTCACTACTGGTA----TAGCATATGTAAGTGCGGG    491

BSNT_04664___    498 TGGAGCAAGAAGAGGTGA-AGAGATAAGC----ACTTATCTGCTTGTTC-    541
                     .||..||..||.|||.|| |.| ||||||    ||.||..||     || 
RBAM_028770__    492 AGGTTCATCAAAAGGAGATATA-ATAAGCCGATACGTAAATG-----TCA    535

BSNT_04664___    542 TTACTTTA--GTCAGTTGTCCGGT--GTTATATATTCATTTTATATATAA    587
                     |.||||||  .||.||  .|||||  .||||.|.||  .|||||.|||.|
RBAM_028770__    536 TAACTTTAATATCCGT--ACCGGTAAATTATCTCTT--GTTTATTTATCA    581

BSNT_04664___    588 ATACTTTATAGAATTAGGA-ACAAAGTTATTCGAAAAG---AAGATTTTA    633
                     |||..|.|.||||||.||| ||||..||.||   ||.|   |||.||||.
RBAM_028770__    582 ATATATCAAAGAATTTGGATACAAGATTTTT---AACGGGAAAGTTTTTG    628

BSNT_04664___    634 ATCATTATGTATATGC--TCCCGCTAATAAATCT----------TTTATT    671
                     .|..||   |||||.|  ||||..|.||.|||.|          |||.||
RBAM_028770__    629 TTGCTT---TATATACAGTCCCTGTTATTAATATAATACTAGAGTTTTTT    675

BSNT_04664___    672 ---------------AGAGGACGTTCTGAGTAA--------TAG-ATTAA    697
                                    |||||| ||..||.|.||        ||| ||.||
RBAM_028770__    676 AGGCATTGCTTTGAAAGAGGA-GTAGTGGGGAAAGTTAATTTAGTATCAA    724

BSNT_04664___    698 AATCT-TCGGCTTTTTTGTCTAATCTGAATTTGATTTCATTTTTTGTCCT    746
                     .|||| ||  ||||              |||||||..|.||.|||     
RBAM_028770__    725 TATCTCTC--CTTT--------------ATTTGATAGCTTTATTT-----    753

BSNT_04664___    747 AGTTC-TTACTGTATCGATTCTTATCCATAAAGGGATAAGAAAATTTAAA    795
                       ||| |||||||                  |||..|||.|||.|..|||
RBAM_028770__    754 --TTCATTACTGT------------------AGGTTTAATAAAGTACAAA    783

BSNT_04664___    796 CAAAAAGAGCAA--AAGTCAATT-TTGAAAGTCCTTGCTTATACA--AAT    840
                     .|||.|||||||  ||.|  ||| ||  |||.|.||.|||.|| |  |||
RBAM_028770__    784 AAAACAGAGCAAGCAAAT--ATTCTT--AAGACTTTTCTTTTA-ATTAAT    828

BSNT_04664___    841 ATCTTTTCTTTCAGTCCGTTTATTGTCTTTTTTGCTGTTCCATATGTG--    888
                     ||.|||.|||||...||.|   ||||.|||||         .||||||  
RBAM_028770__    829 ATTTTTGCTTTCTCACCAT---TTGTATTTTT---------GTATGTGGC    866

BSNT_04664___    889 -----------TTTTT--CGAGAAGTATGTCTCACC--TTTTAGTTTGGC    923
                                |||||  .||..|.|||||.||..|  ||||||||  ||
RBAM_028770__    867 ACCCTACATCATTTTTAATGACTATTATGTTTCTTCTTTTTTAGTT--GC    914

BSNT_04664___    924 TGCTTTTACACTTGTT-ATACCTTTTTCTTTAGTATATCAATTTATGACT    972
                      ||.|||.|..||.|| ||.||||||||||||||.|||||||||||||||
RBAM_028770__    915 -GCCTTTTCTTTTATTAATTCCTTTTTCTTTAGTTTATCAATTTATGACT    963

BSNT_04664___    973 AATAGACTTTATAATATCGACTTTGTTGTGGGGCGGCTTAAGTACTACGG   1022
                     ||||.|.|.|||.|.||.||.|||.||.|.||||||.|.||.||.||..|
RBAM_028770__    964 AATAAAATCTATGAAATTGATTTTATTATTGGGCGGTTGAAATATTATAG   1013

BSNT_04664___   1023 TTTTTTAGCCATTACACCTAC------TATTATCGTAGTGACCATCTTTA   1066
                     |.|||||||..|.||.|||||      |||||      |.||.||.|.|.
RBAM_028770__   1014 TCTTTTAGCTGTCACTCCTACTTTACTTATTA------TTACAATTTATG   1057

BSNT_04664___   1067 AT----TACATTCAGCAACCAAAGGATATC----TTTTATTTAGTTAAAC   1108
                     ||    ||||   || |.|||||    .||    ||||||....||||||
RBAM_028770__   1058 ATCTTGTACA---AG-ATCCAAA----CTCAGAGTTTTATACGTTTAAAC   1099

BSNT_04664___   1109 TAACAATTGC-AATATATGTTCTTATGTTTGCCGTTTTTTACTTTAAAGA   1157
                     |||| .|||| .|.||||.||.|||||||.||.||.|||||.|..|||||
RBAM_028770__   1100 TAAC-TTTGCTGACATATATTATTATGTTGGCTGTGTTTTATTCAAAAGA   1148

BSNT_04664___   1158 AATCATTGATTTTCGTTTCAAGTTGAAA-AGATTTACAGAGAAATTTAAT   1206
                     .|||.|.|||||||||||| .|||.||| .|.|||.|.||.|||..||||
RBAM_028770__   1149 GATCTTAGATTTTCGTTTC-CGTTTAAAGCGTTTTTCTGAAAAACATAAT   1197

BSNT_04664___   1207 TATCAAGATGGGATTTTTAAATTTACTCAGTTGATTAAGCAAGCATCATC   1256
                     |||||.||..|.||.||.||.||||||||..|.|||||...|||.|||||
RBAM_028770__   1198 TATCAGGACAGCATATTCAAGTTTACTCAAATAATTAAAGGAGCTTCATC   1247

BSNT_04664___   1257 AGTAGATCAAGTACTTAATCACT----TTAAAAATACAATCCTAGAAGTA   1302
                     ..||.|.||||    ||.|||||    ||.||..|||..|.||.|||||.
RBAM_028770__   1248 CTTAAAGCAAG----TATTCACTGAACTTGAATCTACTCTACTTGAAGTT   1293

BSNT_04664___   1303 TTAAACATAGATAATGCTTGCGT---GTATGATAATTCTAAAGG-----G   1344
                     |          |.|||.|| .||   |||||  ..||.||.|||     |
RBAM_028770__   1294 T----------TGATGGTT-AGTAAAGTATG--TGTTTTAGAGGTAGAAG   1330

BSNT_04664___   1345 GAAATCACCCTTCTTA---GTAA-GAACAACTTTAAAGAT-CTGACTTAT   1389
                     ||.|        ||||   |||| |.|....|||||.||| .|||   ..
RBAM_028770__   1331 GAGA--------CTTAAATGTAAGGTATTTTTTTAATGATAATGA---GA   1369

BSNT_04664___   1390 AAAAATCAT--GAGC-------------AATATGTGAAA----AATTTTT   1420
                     ||||||.||  ||||             |.||..|||||    ||     
RBAM_028770__   1370 AAAAATTATGGGAGCTGTATTCTCATCAATTAGCTGAAACGACAA-----   1414

BSNT_04664___   1421 CTGGTGATATCGGTAAAATTAAAGAGTTTA-----AACAAGGTTTTATTA   1465
                        ||||.||.||.||.||     ||||.|     |..||||.|||.|.|
RBAM_028770__   1415 ---GTGAAATTGGCAAGAT-----AGTTCAGGTGGATAAAGGGTTTTTAA   1456

BSNT_04664___   1466 TTAAAATAGGTGAACGAGGAGAC-AGATCATTTTTAGTACTCTGTTTCTC   1514
                     |.||||||||.||||| ||..|| |.|||||...|.|||||.|||||.||
RBAM_028770__   1457 TGAAAATAGGGGAACG-GGGCACTAAATCATACATTGTACTGTGTTTATC   1505

BSNT_04664___   1515 AAGTTAT-AATACTTTTAAGTTAACAAGGGATGAAATTGCATGGCTTCAA   1563
                      |.|||| ||||||...||..||||..|||||||.|||.|.|||.|..||
RBAM_028770__   1506 -ATTTATGAATACTCCGAAACTAACTTGGGATGAGATTTCTTGGTTAAAA   1554

BSNT_04664___   1564 ACATTAGCATTTTATACAAATGTCTCATTGGAAAACGTTATGAAAATCGA   1613
                     ||.|||.||||.||.||.|.|.|..|..||||.||.||..|.||||||||
RBAM_028770__   1555 ACCTTATCATTCTACACCAGTATTACGATGGAGAATGTGCTTAAAATCGA   1604

BSNT_04664___   1614 AGAATTGATGGTGCATCTTGAGGATTTAAAACAACAAGAATCCAACCCCG   1663
                     ||||.|.|||...|||||.||.||||||||..|||||||..|.|||||.|
RBAM_028770__   1605 AGAACTTATGAATCATCTCGAAGATTTAAAGAAACAAGAGACAAACCCGG   1654

BSNT_04664___   1664 TATGGCTCAAAAAACTCATGTACACGATCGAGGAAAAACAACGCTCGGAT   1713
                     |.|||||.|||||.||.||||..||||||||||||||.||.||.||||||
RBAM_028770__   1655 TCTGGCTAAAAAAGCTGATGTTTACGATCGAGGAAAAGCAGCGTTCGGAT   1704

BSNT_04664___   1714 CTCGCCCGCGATCTCCACGATTCGGTTCTTCAGGATTTGATTTCCTTAAA   1763
                     .|.|||||.|||||.||.|||||.||.||.|||||.||||||||.||.||
RBAM_028770__   1705 TTGGCCCGTGATCTGCATGATTCAGTGCTGCAGGACTTGATTTCTTTGAA   1754

BSNT_04664___   1764 ACGCCAGTGTGAGCTGTTTTTGGGTGATTTTAAGAAGGGTGATAATCCGT   1813
                     .||||||||||||||||||.|||..|||||||||||   .||..|.||.|
RBAM_028770__   1755 GCGCCAGTGTGAGCTGTTTCTGGCCGATTTTAAGAA---AGAGGAGCCTT   1801

BSNT_04664___   1814 GCCGTGAAGAGGTGCAGGACAAGCTTGTACAGATGAATGAGCAGATGTCT   1863
                     |||....|||||||||||||||||||...||||||||||||||||||||.
RBAM_028770__   1802 GCCACATAGAGGTGCAGGACAAGCTTCATCAGATGAATGAGCAGATGTCG   1851

BSNT_04664___   1864 GATGTGATTTCGATGACGAGGGAGACGTGTCATGAGCTGCGGCCGCAGCT   1913
                     |||||.||||.||||||..||||||||||.||||||||.||.||.|||||
RBAM_028770__   1852 GATGTCATTTTGATGACCCGGGAGACGTGCCATGAGCTTCGTCCTCAGCT   1901

BSNT_04664___   1914 TCTGTATGATCTTGGG-CTGGTCAAGGCGCTGTCGAAGCTGGTGGCGCAG   1962
                     .||||||||| ||||| ||||||||||||.|.||.|||||.|..||.|||
RBAM_028770__   1902 GCTGTATGAT-TTGGGCCTGGTCAAGGCGGTATCCAAGCTTGCCGCACAG   1950

BSNT_04664___   1963 CAGCAGGAGCGGGTTCCGTTTCATATCCGTTTAAATACCGGGAGATTTAC   2012
                     |||||||||||.|..|||||||||||||||.|.|||||.||..|.|||||
RBAM_028770__   1951 CAGCAGGAGCGTGCGCCGTTTCATATCCGTCTGAATACGGGCCGGTTTAC   2000

BSNT_04664___   2013 GGCTTCCCTTGATCTGGATTCGCAGCTGAATTTGTACCGGATCATTCAAG   2062
                     |||..|.||.|||.|||||.|||||||||||||||||||.||.|||||.|
RBAM_028770__   2001 GGCGGCGCTGGATTTGGATACGCAGCTGAATTTGTACCGCATTATTCAGG   2050

BSNT_04664___   2063 AGTTTCTGTCTAATGCGGTCAAGCACTCTCAGGCGACGGATGTGCTGATT   2112
                     |.|||||.||.||.||..|.|||||.||.|||||||..||.|||||||||
RBAM_028770__   2051 AATTTCTTTCGAACGCCATGAAGCATTCACAGGCGAATGAGGTGCTGATT   2100

BSNT_04664___   2113 ATGCTCATCAGTATTCAAAACAAAATCGTTCTTCATTATGAGGATGATGG   2162
                     |||||.|||||.||||||||.|||.|..||||.||||||||.||.||.||
RBAM_028770__   2101 ATGCTGATCAGCATTCAAAATAAAGTGATTCTGCATTATGAAGACGACGG   2150

BSNT_04664___   2163 CGTAGGATTTGATCAGGAAAAGAATAC--TGAGCATTCCATGAGCATGGG   2210
                     .||.||.|...||||||  |||||..|  .|.|||.||.|||||||||||
RBAM_028770__   2151 TGTCGGCTGCAATCAGG--AAGAAGGCGGCGGGCAGTCGATGAGCATGGG   2198

BSNT_04664___   2211 GCTTTCTGGCATTAAGGAGAGAGTCAGGGCTTTAGATGGGCGCCTTCGGA   2260
                     .|||||.||.|||||||||.|.|||.|.||..|.||.||      .||||
RBAM_028770__   2199 TCTTTCGGGTATTAAGGAGCGCGTCCGTGCGCTTGACGG------ACGGA   2242

BSNT_04664___   2261 TTGAA-------ACAAGTGAAGGAAAGGGCTTTAAGGCTGATATTGAAAT   2303
                      ||||       ||||||||||||||.||.|||||.||.|||||||||||
RBAM_028770__   2243 -TGAAAATCGACACAAGTGAAGGAAACGGTTTTAAAGCGGATATTGAAAT   2291

BSNT_04664___   2304 CGAATTGTAA   2313
                     .|||||||||
RBAM_028770__   2292 GGAATTGTAA   2301


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