Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04692 and RBAM_028940

See Amino acid alignment / Visit BSNT_04692 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:11
# Commandline: needle
#    -asequence dna-align/BSNT_04692___yukC.1.9828.seq
#    -bsequence dna-align/RBAM_028940___yukC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04692___yukC-RBAM_028940___yukC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04692___yukC-RBAM_028940___yukC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04692___yukC
# 2: RBAM_028940___yukC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1399
# Identity:     938/1399 (67.0%)
# Similarity:   938/1399 (67.0%)
# Gaps:         155/1399 (11.1%)
# Score: 3010.0
# 
#
#=======================================

BSNT_04692___      1 ATGTCAGGTAAACAAAAATCATATTTAGAAAACCAATTAGAAGCTGTTGC     50
                     |||.|||||.|..|.|.|||.||||||||||...|||||||.||.||  |
RBAM_028940__      1 ATGACAGGTCATAACAGATCTTATTTAGAAACAGAATTAGACGCCGT--C     48

BSNT_04692___     51 CGAGA--AAACAGATGCCGGCTATACATTTACCTTTCAACGGGAAAAAAT     98
                     ||.||  ||||.||..|.||||..||.||.|||||.||.|||||||||||
RBAM_028940__     49 CGGGAAGAAACCGAATCAGGCTTCACGTTCACCTTCCAGCGGGAAAAAAT     98

BSNT_04692___     99 AAAGCTTCTCGACGGTCTTGAAGCTAACGTGATCAAAGATATAAATCCAT    148
                     .||||||||.|||||.||.|||||.||||||||.||||||....||||.|
RBAM_028940__     99 CAAGCTTCTTGACGGGCTGGAAGCAAACGTGATTAAAGATGCTGATCCTT    148

BSNT_04692___    149 TTTTTTATAAAGAAATCGATGTGACGGATGATGAAGTAATCATCACAATC    198
                     |||||.|.|||||..||...||..|.||.||.|||||||.||||||||||
RBAM_028940__    149 TTTTTCAAAAAGAGGTCTCAGTTTCAGAAGACGAAGTAACCATCACAATC    198

BSNT_04692___    199 CAACCTCCCTCCTCCTATAAAGCATTCCGCTTCATGAAAGCTAAGGATAA    248
                     .|||||||.||.||.|||.|.||.|||||||..||.||||..||.|||||
RBAM_028940__    199 AAACCTCCTTCTTCTTATCAGGCTTTCCGCTATATAAAAGGAAAAGATAA    248

BSNT_04692___    249 AAAAAGTAAATGGCAGTTTGCCTATCAGCTTGTTCAAGCCGTACAGCAGC    298
                     ||||||.|..|||||.||||||||.|..||.||.||||||||..|.||||
RBAM_028940__    249 AAAAAGCAGGTGGCAATTTGCCTACCGTCTCGTCCAAGCCGTGAAACAGC    298

BSNT_04692___    299 ACAATCTGTCGAGGCTGAATTTGATTGTCGCTCCTGAAAACATTGTATTC    348
                     |.||.|||....|.||.|||.||||||.|||.||||||||.||.||.||.
RBAM_028940__    299 ATAAGCTGAAACGTCTCAATCTGATTGCCGCCCCTGAAAATATCGTGTTT    348

BSNT_04692___    349 GATAAAGGGCTTACGCCTTATTTTCTCCATTATGGAGTAAAAGAAAGCAT    398
                     |||||||.|||.||||||||.|||||.|||||.||.|||||.||.|||.|
RBAM_028940__    349 GATAAAGCGCTGACGCCTTACTTTCTTCATTACGGCGTAAAGGAGAGCCT    398

BSNT_04692___    399 TCCTCCTTACGAGCGTGATGAG-GAAAGAGTATGGCAGGAGCTGAAAGCG    447
                     |||.|||||.|||...||| || |||||.||.|...|.|||||.|||||.
RBAM_028940__    399 TCCGCCTTATGAGGAAGAT-AGAGAAAGGGTGTTAAAAGAGCTCAAAGCC    447

BSNT_04692___    448 GCAGCGGCTTTGGCAGTTGACGGCGCTTTTGCGTTTGAAGACTACCTGAA    497
                     ...|||||..|.|.||.||||||.||.|...|.||.||.||.||..||||
RBAM_028940__    448 TGTGCGGCGCTTGTAGCTGACGGGGCGTACACCTTCGATGAATATTTGAA    497

BSNT_04692___    498 ATTCAATGAAACGC-TCACGTTCTCCGCAGAGG-CAAAGGCGATATTAGA    545
                     .|.|||.||.|||| |||| |||||..|.|||| .|||.||| |..||||
RBAM_028940__    498 GTACAAGGAGACGCTTCAC-TTCTCTCCTGAGGTGAAAAGCG-TGCTAGA    545

BSNT_04692___    546 TACTGAATCCTATGATGATTTGCTCGAGCTG---------ATTCAAATC-    585
                     ..|.||       ||.||||  ...||.|||         |||||||.| 
RBAM_028940__    546 GGCGGA-------GACGATT--GAAGAACTGGAAGAAACCATTCAAACCG    586

BSNT_04692___    586 CATATTGATGAGCTCGAAGCCAAAG---CAAAAACATACATACATATCCC    632
                     || ||||||...|||||||  ||||   | ||.|||||||||.|..|.||
RBAM_028940__    587 CA-ATTGATTCCCTCGAAG--AAAGGGAC-AAGACATACATAAAACTGCC    632

BSNT_04692___    633 GAGAAAGAAGTGGAACATCCAGCGATATATCGGCCTGGGGCT--CATTGT    680
                     ||.||||||.|||||.|||||..||||...|||.||||.|||  ||  ||
RBAM_028940__    633 GAAAAAGAAATGGAAAATCCAAAGATACGCCGGGCTGGCGCTTGCA--GT    680

BSNT_04692___    681 TTTGCTTGTACCGGCACTTATTTATTCGATGTACGCCTTATTTTTCGCGC    730
                     ..|.|||||.|||.|||||.||||.||..|.||||...|.||||||||.|
RBAM_028940__    681 CCTCCTTGTGCCGACACTTCTTTACTCCTTATACGTTCTGTTTTTCGCCC    730

BSNT_04692___    731 AGCCAAAGCACCAGGCGATAGTGGACAGCAACCGTGCGTTCTTAAACAAG    780
                     ||||||||||..||||.||....||.||||||||....||.|||||..||
RBAM_028940__    731 AGCCAAAGCAAGAGGCAATTACAGAAAGCAACCGCTATTTTTTAAATCAG    780

BSNT_04692___    781 CAGTACAGTGAAGTCATCAGCACACTGTCCAAGTACGAGGCGGAAAGCCT    830
                     ||||||||..|||||||...||||||..||||.|||||.|||||||||||
RBAM_028940__    781 CAGTACAGCAAAGTCATTGACACACTCGCCAAATACGATGCGGAAAGCCT    830

BSNT_04692___    831 GCCTGAATCGGTGCAGTATCAGCTGGCGACGTCCTATGTTGAGGTCGAAA    880
                     .||.|||||.||||||||..||||.||..|.||.|||||.|..||.||||
RBAM_028940__    831 CCCGGAATCTGTGCAGTACGAGCTTGCTTCCTCTTATGTGGCAGTTGAAA    880

BSNT_04692___    881 ACCTGGGGAGTGCAAAAAC----CAAAAATATAGAAAATAACTTAGTCAC    926
                     |.||   |||.| ||.|||    .||||||||.|..|||   .|.|||||
RBAM_028940__    881 ATCT---GAGAG-AAGAACAGCGGAAAAATATCGGGAAT---CTGGTCAC    923

BSNT_04692___    927 CCTTCAATCAGACCCTCAGCATTTCTTATATTGGATTGATTAT-GGTAGA    975
                     .||.|||||||||||..||||||||.|.||||||||||| ||| ||.|||
RBAM_028940__    924 GCTGCAATCAGACCCGAAGCATTTCCTTTATTGGATTGA-TATCGGCAGA    972

BSNT_04692___    976 GGAGAATACAAAGAAGCGATCAGTATCGGCCGTAAGCTTGAATACAATGA   1025
                     ||.|||.|..|||||||.||||..||||||||.||.|||||.|||||...
RBAM_028940__    973 GGGGAAAATGAAGAAGCCATCAAAATCGGCCGCAATCTTGAGTACAACCC   1022

BSNT_04692___   1026 TTATATTT-------ACTTTGCCCTAGCTAAATATAAACAGCAGCTTTTA   1068
                     .||.||.|       ||||       .|.||||||||||||||..|.|||
RBAM_028940__   1023 GTACATCTGGCTCGGACTT-------ACAAAATATAAACAGCAATTATTA   1065

BSNT_04692___   1069 TCTGAGGA---TACAAATGATGAAGATATACAAAAAGAACTTGACTCAGT   1115
                     .|.||.||   ||..||.||.||.||.|..||.||||||||.|||.|.||
RBAM_028940__   1066 GCGGATGACAGTATGAAAGACGACGAAAAGCAGAAAGAACTGGACGCCGT   1115

BSNT_04692___   1116 AAATAGTGAGCTTGAAAAAGCCCAAAAAGAACGTCAAGAAAATAAACAGT   1165
                     ..|.||.|||||||..||.||..||||||                     
RBAM_028940__   1116 GGAAAGCGAGCTTGCGAAGGCGAAAAAAG---------------------   1144

BSNT_04692___   1166 CTAATTCTGAAACATCGTTAGTCGATACAAGCGAAGAACAGACACAAACA   1215
                                        ||.||        ||.||.||| ||.|||.|
RBAM_028940__   1145 -------------------AGGCG--------GAGGAGCAG-CATAAAGA   1166

BSNT_04692___   1216 GACGAAGAAAAACAAGCAGAAGAGAAAGCGGCAGAAGAAAAAGCCGCAGC   1265
                     ..||.||.|||||       .|.||.|.||.|       .||||..|.||
RBAM_028940__   1167 AGCGGAGGAAAAC-------GGTGACACCGCC-------GAAGCTTCCGC   1202

BSNT_04692___   1266 CG---AGGA-AAAAGCGAAAAAAGAAGAACAGAAGAAAAAAGAAGACGAG   1311
                     ||   |||| .|||||    |||.||| ||| |||.||||       ||.
RBAM_028940__   1203 CGGACAGGATGAAAGC----AAACAAG-ACA-AAGCAAAA-------GAT   1239

BSNT_04692___   1312 AAAAAAGA-AACAGAAAAGAAAGATGAGAAAAAAGATGACAAATAA---   1356
                     ||.||||| ||| ||.|||||||||||||||||||||||.|||.||   
RBAM_028940__   1240 AACAAAGAGAAC-GACAAGAAAGATGAGAAAAAAGATGAAAAAAAATAA   1287


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