Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04700 and RBAM_029000
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:12
# Commandline: needle
# -asequence dna-align/BSNT_04700.1.9828.seq
# -bsequence dna-align/RBAM_029000.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04700-RBAM_029000.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04700-RBAM_029000.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04700
# 2: RBAM_029000
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 236
# Identity: 147/236 (62.3%)
# Similarity: 147/236 (62.3%)
# Gaps: 46/236 (19.5%)
# Score: 445.0
#
#
#=======================================
BSNT_04700 1 ATGGCAAATCCTTTTGAAAATGCG----GATGGCACATATTTGGTGCTGG 46
|||.|||||||.|||||| || ||.|||.||||....|||||.|
RBAM_029000 1 ATGACAAATCCATTTGAA----CGGGAAGACGGCTCATACCATGTGCTCG 46
BSNT_04700 47 TCAATGAAGAAGGCCAATATTCCCTATGGCCGGGTTTTATAGATGTGCCG 96
||||||..||||||||.||.||.||.|||||||..|.|.|.|||||||||
RBAM_029000 47 TCAATGCTGAAGGCCAGTACTCACTGTGGCCGGCCTATCTGGATGTGCCG 96
BSNT_04700 97 AGCGGCT-GGACAGTCG-TTCATGAGCAAAAAGGGCGTGAA--------- 135
.|||||| |||.|..|| .|||.|| .||||
RBAM_029000 97 GGCGGCTGGGAAATACGCCTCACGA-----------ATGAAACCCGCCCC 135
BSNT_04700 136 GCTTGTTTGGACTATATCCAATCGCATTGGAGCGATATGAGGCC------ 179
|.||||.|.||.|||||..||.|..|.|||.|.|||||||||||
RBAM_029000 136 GTTTGTCTCGAATATATTGAAACAAACTGGCGTGATATGAGGCCGGAAAG 185
BSNT_04700 180 ----AAACA-GCCTAAAGGCTGTTGAAAATGTGTAA 210
||||| |||.|| ||.|.|.|||| ||||
RBAM_029000 186 CCTGAAACAGGCCGAA--GCCGCTAAAAA---GTAA 216
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