Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04818 and RBAM_029590
See
Amino acid alignment /
Visit
BSNT_04818 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:21
# Commandline: needle
# -asequence dna-align/BSNT_04818___yurH.1.9828.seq
# -bsequence dna-align/RBAM_029590___pucF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04818___yurH-RBAM_029590___pucF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04818___yurH-RBAM_029590___pucF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04818___yurH
# 2: RBAM_029590___pucF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1289
# Identity: 891/1289 (69.1%)
# Similarity: 891/1289 (69.1%)
# Gaps: 97/1289 ( 7.5%)
# Score: 2936.5
#
#
#=======================================
BSNT_04818___ 1 ATGGAAAAGCAGAAGCTTT---CAGTAAAAAACAGCATCACAGATTATAT 47
||||||.|.|||.|||||| |.|..||.|.|.|.||..|.|||.|.||
RBAM_029590__ 1 ATGGAACATCAGCAGCTTTCGGCGGCGAATATCGGGATTTCCGATGACAT 50
BSNT_04818___ 48 TGAATGGCTCGCCCAATACGGTGCGTCTGCGGATGGCGGCGTAACGAGGC 97
..|||||||..|.||||.|||.||.||.||....|||||.||.|||||||
RBAM_029590__ 51 ACAATGGCTGTCTCAATTCGGCGCTTCCGCTTCCGGCGGAGTGACGAGGC 100
BSNT_04818___ 98 TTTTATACACAAAAGAGTGGATGGACGCACAGCTTGCTGTGAAAACGGAA 147
|||||||.||.|||||.|||||||||||.||||||||.||.||||.|.||
RBAM_029590__ 101 TTTTATATACGAAAGAATGGATGGACGCCCAGCTTGCCGTCAAAAAGAAA 150
BSNT_04818___ 148 ATGTCTGCTTTCGGGCTTGAAACAAGATTCGACGATGTCGGCAATGTGTT 197
|||...||.||||||||.|||||...|||.|||||||||||.||.||.||
RBAM_029590__ 151 ATGGAGGCGTTCGGGCTGGAAACGGCATTTGACGATGTCGGTAACGTATT 200
BSNT_04818___ 198 TGGAAGGCTTTCGGGCACCCAGTCTCCGGATGAAGTCATTGTAACCGGTT 247
.||..||||....|||||..|.||.||.|||||.||.|||.|.|||||.|
RBAM_029590__ 201 CGGCCGGCTGAACGGCACAGAATCGCCTGATGAGGTGATTCTGACCGGGT 250
BSNT_04818___ 248 CACATATCGATACTGTCATCAATGGGGGAAAATACGACGGCGCCTATGGT 297
|.|||||.||.|||||.||..|.||.||.|||||.|||||.||.|..||.
RBAM_029590__ 251 CGCATATTGACACTGTTATTGACGGCGGCAAATATGACGGTGCGTTCGGC 300
BSNT_04818___ 298 GTTCTGGCGGCGATGCTTGCGATAAAGCGGC---TCAAAGAGACATATGG 344
||.|||||||..|||||.||||| .|||| |..|.|||||.|..||
RBAM_029590__ 301 GTGCTGGCGGGCATGCTGGCGAT---CCGGCATTTGCATGAGACGTGCGG 347
BSNT_04818___ 345 AGCG-CCGAAAAAAACACTCGAAGCGGTATCTTTATGTGAGGAGGAGGGC 393
||| |||||||||||.||.||.||.||.||..|.|||||.|||||.||.
RBAM_029590__ 348 -GCGTCCGAAAAAAACGCTGGAGGCTGTGTCGCTCTGTGAAGAGGAAGGG 396
BSNT_04818___ 394 AGCCGTTTTCCAATGACCTATTGGGGATCAGGGAATTTAACGGGTGTTTT 443
|||||||||||.||.|||||||||||.|||||.|||.|.||.||||.|||
RBAM_029590__ 397 AGCCGTTTTCCCATCACCTATTGGGGCTCAGGCAATATCACCGGTGCTTT 446
BSNT_04818___ 444 TTC-ATTACAGGATGGAGCAGAGCCAAGAGACGAATCAGGAGTCTCGCTG 492
.|| .||.|| ||||..|.|..|||.|.|||||..||.||..|.||.|||
RBAM_029590__ 447 CTCGCTTTCA-GATGCGGAAACGCCGAAAGACGCGTCCGGCATTTCTCTG 495
BSNT_04818___ 493 CAACATGCGATGCAAGAGAACGGTTTTGGCAAAGGTGTGTTTCAGGCAGC 542
..|.|.||.||||...|||||||.||.|| |.|||||.|
RBAM_029590__ 496 AGAGAAGCCATGCGGCAGAACGGCTTCGG-----------TGCAGGCCG- 533
BSNT_04818___ 543 ATAT------------CGGACAGATATCAGCGCTTTTGTTGAGCTCCATA 580
.||| ||.||.|||||||..||.|||.|.||..|.||||
RBAM_029590__ 534 TTATCCAGCACCGCTGCGCACTGATATCAAAGCCTTTCTGGAAATTCATA 583
BSNT_04818___ 581 TTGAACAGGGACAGACATTGGAAATGTCAGGACGGGACCTCGGGATTGTG 630
||||||||||.||.||..|.|||...||||||..|||..||||||||||.
RBAM_029590__ 584 TTGAACAGGGGCAAACGCTTGAACGATCAGGAAAGGATATCGGGATTGTC 633
BSNT_04818___ 631 ACAAGCATTGCGGGGCAGAGGCGCTATCTCGTCACGCTGGAGGGGGAATG 680
||..|.|||||.||.|||||.||||||..|||.|||||.||.||.|||||
RBAM_029590__ 634 ACCGGGATTGCCGGACAGAGACGCTATACCGTTACGCTTGACGGTGAATG 683
BSNT_04818___ 681 CAATCATGCGGGAACCACCTCCATGAAATGGCGCAAGGACCCGCTCGCAG 730
|||.|||||.||.|||||.||.|||||||||||.||.|||||||||||.|
RBAM_029590__ 684 CAACCATGCCGGCACCACTTCGATGAAATGGCGGAAAGACCCGCTCGCCG 733
BSNT_04818___ 731 CCAGCAGCCGTATCATTCATGAGCTGTTGCT----GCGGTCGGAGGAGCT 776
|..|.|||.|.|||||.||.||.||..|||| ||||...|| |.
RBAM_029590__ 734 CGGGAAGCAGCATCATCCACGAACTCATGCTCTCAGCGGAAAGA----CA 779
BSNT_04818___ 777 GCCGGATGAGCTCCGTCTGACATGCGGAAAAATAACGGCAGAGCCCAATG 826
||||||.||||||||.|||||.|||||.|||||.||||..||.||.|||.
RBAM_029590__ 780 GCCGGAAGAGCTCCGCCTGACGTGCGGGAAAATGACGGTTGAACCGAATA 829
BSNT_04818___ 827 TAGCCAATGTCATACCGGGCCGCGTCCAGTTTTCAATCGATATTCGCCAT 876
|.||.||||||||.||||||||..||||||||||..|.|||||||||||.
RBAM_029590__ 830 TGGCGAATGTCATTCCGGGCCGTATCCAGTTTTCCGTTGATATTCGCCAC 879
BSNT_04818___ 877 CAGCATCAGCATGTGCTGGAGCAG--TTTCATCAAGACA-TGG------T 917
|.|.|..|..|.|||||| |||| ||.|||| |||.| ||| |
RBAM_029590__ 880 CCGGAGGAAGACGTGCTG--GCAGCCTTCCATC-AGAAACTGGTGTCGAT 926
BSNT_04818___ 918 TGCTTTG-----ATCAACGGCATTTGCCTACAAAAAGGAATTCGCGCCGT 962
|| ||| ||||.|.||| || ||||||.|..|..||||
RBAM_029590__ 927 TG--TTGAAAACATCAGCCGCA---GC------AAAGGAGTCAGGCCCGT 965
BSNT_04818___ 963 GATTGATGAATATATGCGGATAGAGCCTGTGCCGATGGACGAAAGGCTGA 1012
.|||||||||||||||.||||||||||.||.|..|||.|..|.|..||||
RBAM_029590__ 966 TATTGATGAATATATGAGGATAGAGCCGGTTCAAATGAATCAGACACTGA 1015
BSNT_04818___ 1013 AG------GCTGCGGCTTTTGAAACAGCATTAGAAAA-----CGGCTTCA 1051
.| ||.||| ||..|.|||..||||.| ||| |
RBAM_029590__ 1016 CGCGAACCGCAGCG------GAGGCTGCAAAAGAACAGGGGGCGG----A 1055
BSNT_04818___ 1052 GCTGTGAGGAAATGGTGAGCGGAGCAGGGCATGACGCGCAAATGATCGGA 1101
.|.| |||.||||.||.||||||||.||.||||||||.||.|||.||||.
RBAM_029590__ 1056 CCCG-GAGAAAATCGTAAGCGGAGCGGGACATGACGCCCAGATGCTCGGC 1104
BSNT_04818___ 1102 AGGCGCTATCCTGCTTGTATGCTGTTTGTGCCGAGCCGAGGCGGCGTCAG 1151
||...||.|||.||.||.||||||||||||||||||||.|||||..||||
RBAM_029590__ 1105 AGAACCTTTCCGGCCTGCATGCTGTTTGTGCCGAGCCGTGGCGGAATCAG 1154
BSNT_04818___ 1152 CCACTCACCGAAGGAATATACGTCAGC-CAGACAGCTTGAGATCGGCGTC 1200
||||||.|||...||||..||..|.|| || .||||||||.|.|||||||
RBAM_029590__ 1155 CCACTCGCCGCTTGAATTCACACCCGCACA-TCAGCTTGAAACCGGCGTC 1203
BSNT_04818___ 1201 CGCGCACTGACTGATTTATTATACAAACTGGCTTACTGA 1239
|...|.|||.|..||.|||||.|.|||||.||.||.|.|
RBAM_029590__ 1204 CTTACGCTGGCGAATGTATTACATAAACTTGCCTATTAA 1242
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.