Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04861 and RBAM_029870

See Amino acid alignment / Visit BSNT_04861 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:23
# Commandline: needle
#    -asequence dna-align/BSNT_04861___yusG.1.9828.seq
#    -bsequence dna-align/RBAM_029870___yusG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04861___yusG-RBAM_029870___yusG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04861___yusG-RBAM_029870___yusG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04861___yusG
# 2: RBAM_029870___yusG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 245
# Identity:     180/245 (73.5%)
# Similarity:   180/245 (73.5%)
# Gaps:          16/245 ( 6.5%)
# Score: 667.5
# 
#
#=======================================

BSNT_04861___      1 ATGGCTTTCGACAAACAAAAGCTCGATGTCACCAATGACGTGACAGGCCG     50
                     ||||||||.||.|||||||||.|||||||.||..|..||||.||.|||||
RBAM_029870__      1 ATGGCTTTTGATAAACAAAAGGTCGATGTGACGGAGAACGTTACGGGCCG     50

BSNT_04861___     51 CTTTCAAAATGGCCGGCTCTCGTTATATCATGATAATGAGATGATCGGCC    100
                     |||||||||.||||||.|.||.||.|.||||||.|||||....||||||.
RBAM_029870__     51 CTTTCAAAACGGCCGGTTTTCCTTGTTTCATGAAAATGAAGCCATCGGCG    100

BSNT_04861___    101 AAATGACAAGCATGAATGAATATGAGCTTAAGCCCGGTTATTCCTTTGAA    150
                     |.||||||.||||..|..|.||.|||||.||.|..||.|.|||.||||||
RBAM_029870__    101 AGATGACAGGCATAGACCAGTACGAGCTCAAACAAGGCTTTTCATTTGAA    150

BSNT_04861___    151 AATGAGAAATTTTATAAGACAGCCGATGTGGTTTCTGGAGACGACGCA--    198
                     |||.|.|||||||||||.|||||||||||..|      |.|||  |||  
RBAM_029870__    151 AATCAAAAATTTTATAAAACAGCCGATGTCAT------AAACG--GCAGC    192

BSNT_04861___    199 ------AAATATGTAGATTGTGACTACGAAAACGGCTGGTGTTAA    237
                           ||||||||.|||||.||.||.||.||.||||||||||||
RBAM_029870__    193 GATCCGAAATATGTCGATTGCGATTATGAGAATGGCTGGTGTTAA    237


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