Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04881 and RBAM_029990
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:25
# Commandline: needle
# -asequence dna-align/BSNT_04881.1.9828.seq
# -bsequence dna-align/RBAM_029990___yusQ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04881-RBAM_029990___yusQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04881-RBAM_029990___yusQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04881
# 2: RBAM_029990___yusQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 413
# Identity: 220/413 (53.3%)
# Similarity: 220/413 (53.3%)
# Gaps: 139/413 (33.7%)
# Score: 756.5
#
#
#=======================================
BSNT_04881 0 -------------------------------------------------- 0
RBAM_029990__ 1 ATGATGCCGTTTGTACAGATTCATTTACAGAAAGGGAAAAGCGGATTTTG 50
BSNT_04881 1 -------------------------------------------ATGATTG 7
|||||||
RBAM_029990__ 51 GCTTAAAAAAATGAGCGCCGTTATTCATACCGCGATGACGGAGATGATTG 100
BSNT_04881 8 AAGAAATCAATGTGCCGGAAGATGACTATTTTCAAGT----CATTAG-AC 52
||||.|||.|.|.||||||||||||||| ||..|| ||
RBAM_029990__ 101 ---------ATGTTCCGCATGGTGACTATTTTCAAGTGGTGCACCAGCAC 141
BSNT_04881 53 AATATGAAAAAAGCGAATTTTTTTATGATCCATTTTATCTCCAAGTCGAG 102
||||||.|.||.|||||.||||||||.|..|||||.|||||.|||
RBAM_029990__ 142 -----GAAAAAGGGGAGTTTTTCTATGATCCGTCATATCTTCAAGTTGAG 186
BSNT_04881 103 CGTACTGATGAACTAATATACATTCATTTTACACTGAAACAGTCAAGAAC 152
||.|..||||||||.||.|..||.|..|||||..|||||.|.||.|||||
RBAM_029990__ 187 CGGAGCGATGAACTGATGTTTATCCGCTTTACTTTGAAAAACTCCAGAAC 236
BSNT_04881 153 AACTGAACAGAAAAAAGCACTTTACC--------GCTCAATCGCGAGCCG 194
||||.|.||||||.|||||.|.||.| |||.| |||
RBAM_029990__ 237 AACTCATCAGAAACAAGCATTCTATCAGCATTTGGCTGA--------CCG 278
BSNT_04881 195 GATTCATTCCG---AGCTTGGTGTCAGAAAAGAAGATGTGTTTATCATGC 241
|.|.|| || ||||.||.||||||||||||||||||||||||.|.|
RBAM_029990__ 279 GCTGCA---CGAAAAGCTGGGCGTCAGAAAAGAAGATGTGTTTATCGTCC 325
BSNT_04881 242 TGGCCGGAAATCAGGCTGAGGATTGGTCTTTCGGAAATGGAAGA-GCCCA 290
|..|.||.|||..|||.||.||.|||||.||||||||.|| ||| |||||
RBAM_029990__ 326 TCTCAGGCAATGCGGCGGAAGACTGGTCATTCGGAAACGG-AGAGGCCCA 374
BSNT_04881 291 GATGATTGAATAA 303
|||||| ||||
RBAM_029990__ 375 GATGAT---ATAA 384
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