Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_04881 and RBAM_029990

See DNA alignment / Visit BSNT_04881 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:25
# Commandline: needle
#    -asequence pep-align/BSNT_04881.1.9828.seq
#    -bsequence pep-align/RBAM_029990___yusQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04881-RBAM_029990___yusQ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04881-RBAM_029990___yusQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04881
# 2: RBAM_029990___yusQ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 128
# Identity:      70/128 (54.7%)
# Similarity:    83/128 (64.8%)
# Gaps:          29/128 (22.7%)
# Score: 380.0
# 
#
#=======================================

BSNT_04881         1 ----------------------------MIEEINVPEDDYFQVIRQYEKS     22
                                                 |.|.|:||..|||||:.|:||.
RBAM_029990__      1 MMPFVQIHLQKGKSGFWLKKMSAVIHTAMTEMIDVPHGDYFQVVHQHEKG     50

BSNT_04881        23 EFFYDPFYLQVERTDELIYIHFTLKQSRTTEQKKALYRSIASRIHSELGV     72
                     ||||||.||||||:|||::|.||||.||||.||:|.|:.:|.|:|.:|||
RBAM_029990__     51 EFFYDPSYLQVERSDELMFIRFTLKNSRTTHQKQAFYQHLADRLHEKLGV    100

BSNT_04881        73 RKEDVFIMLAGNQAEDWSFGNGRAQMIE    100
                     |||||||:|:||.|||||||||.|||| 
RBAM_029990__    101 RKEDVFIVLSGNAAEDWSFGNGEAQMI-    127


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.