Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04914 and RBAM_030120
See
Amino acid alignment /
Visit
BSNT_04914 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:26
# Commandline: needle
# -asequence dna-align/BSNT_04914___cssR.1.9828.seq
# -bsequence dna-align/RBAM_030120___cssR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04914___cssR-RBAM_030120___cssR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04914___cssR-RBAM_030120___cssR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04914___cssR
# 2: RBAM_030120___cssR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 686
# Identity: 553/686 (80.6%)
# Similarity: 553/686 (80.6%)
# Gaps: 16/686 ( 2.3%)
# Score: 2213.0
#
#
#=======================================
BSNT_04914___ 1 TTGTCATACACCATTTATCTAGTTGAAGATGAGGATAACCTGAATGAACT 50
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_030120__ 1 TTGTCATACACCATTTATCTAGTTGAAGATGAGGATAACCTGAATGAACT 50
BSNT_04914___ 51 GCTGACGAAGTATTTAGAGAATGAGGGCTGGAACATTACATCTTTTACGA 100
|||.||.||.||||||||||||||.||||||||||||||||||||.||.|
RBAM_030120__ 51 GCTCACAAAATATTTAGAGAATGAAGGCTGGAACATTACATCTTTCACAA 100
BSNT_04914___ 101 AAGGTGAAGACGCCAGAAAGAAAATGACA-CCGTCTCCCCACCTATGGAT 149
||||.|||||.|||||||||.|.||| || ||||||||||||.|.|||||
RBAM_030120__ 101 AAGGCGAAGATGCCAGAAAGCAGATG-CAGCCGTCTCCCCACTTGTGGAT 149
BSNT_04914___ 150 TCTTGATATCATGCTGCCGGATACCGACGGCTATACATTAATAAAAGAAA 199
||||||.||||||||.||||||||.||||||||||||||.||||||||||
RBAM_030120__ 150 TCTTGACATCATGCTTCCGGATACGGACGGCTATACATTGATAAAAGAAA 199
BSNT_04914___ 200 TCAAGGCGAAAGATCCTGACGTGCCGGTCATTTTTATTTCCGCCCGAGAT 249
|.||.|..||||||||.||.||||||||.|||||.||||||||.||.|||
RBAM_030120__ 200 TAAAAGAAAAAGATCCCGATGTGCCGGTTATTTTCATTTCCGCGCGGGAT 249
BSNT_04914___ 250 GCGGATATTGACAGAGTGCTTGGCTTAGAGCTTGGCAGCAATGACTACAT 299
||.||||||||||||||.||.||.||.|||||.||.||||||||.||.||
RBAM_030120__ 250 GCCGATATTGACAGAGTCCTCGGGTTGGAGCTCGGAAGCAATGATTATAT 299
BSNT_04914___ 300 TTCAAAGCCGTTTCTGCCGCGGGAGCTGATTATCCGTGTGCAAAAGCTGC 349
..|.|||||.|||.|||||.|.||.||.|||||.||.||.||.|||||||
RBAM_030120__ 300 CGCCAAGCCCTTTTTGCCGAGAGAACTTATTATACGGGTCCAGAAGCTGC 349
BSNT_04914___ 350 TGCAGCTCGTATATAAGGA--AGCTCCTCCTGTCCAA--AAAAATGAAAT 395
||.|||||||.|||||.|| ||| ||.|| .||| ||||..|..||
RBAM_030120__ 350 TGGAGCTCGTGTATAAAGAACAGC-CCGCC---GCAAAGAAAACCGGCAT 395
BSNT_04914___ 396 TGCCGTCTCCTCGT---ATCGGGTCGCTGAAGACGCCCGCGAGGTCTATG 442
..||||.||.||.| ||..|.|| |||||.|||||.|||||.||||
RBAM_030120__ 396 CACCGTTTCTTCCTACAATGTGATC---GAAGATGCCCGAGAGGTTTATG 442
BSNT_04914___ 443 ACGAAAACGGGAATATTATCAATTTGACGTCAAAGGAATTTGATCTGCTG 492
|.||||.|||.|...|..|||||||||||||.||||||||||||||||||
RBAM_030120__ 443 ATGAAACCGGCAGCCTGGTCAATTTGACGTCTAAGGAATTTGATCTGCTG 492
BSNT_04914___ 493 CTATTATTTATCCATCATAAAGGGCATCCGTACTCTCGTGAGGATATCCT 542
||.||||||.|.|||||||||||.||.||.|..||..|.||.||||||||
RBAM_030120__ 493 CTTTTATTTCTTCATCATAAAGGACACCCCTTTTCCAGAGAAGATATCCT 542
BSNT_04914___ 543 CCTAAAAGTGTGGGGGCATGACTACTTCGGAACAGACCGGGTCGTTGATG 592
.||.|||.|.|||||.|||||.||.|||||.||.||||||||.||.||||
RBAM_030120__ 543 GCTGAAAATATGGGGCCATGATTATTTCGGCACTGACCGGGTGGTCGATG 592
BSNT_04914___ 593 ATCTCGTCCGGAGACTGCGCAGAAAGATGCCTGAATTGAAGGTGGAGACG 642
||||.||.|||||.|||||.|.|||.|||||.|..||.|||||.||.||.
RBAM_030120__ 593 ATCTTGTGCGGAGGCTGCGAAAAAAAATGCCCGGGTTAAAGGTTGAAACC 642
BSNT_04914___ 643 ATTTACGGTTTCGGCTACAGGTTGATGTCATCATGA 678
||||||||.||||||||||||.|||||.|.||||||
RBAM_030120__ 643 ATTTACGGATTCGGCTACAGGATGATGACGTCATGA 678
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.