Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_04914 and RBAM_030120
See
DNA alignment /
Visit
BSNT_04914 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:26
# Commandline: needle
# -asequence pep-align/BSNT_04914___cssR.1.9828.seq
# -bsequence pep-align/RBAM_030120___cssR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_04914___cssR-RBAM_030120___cssR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04914___cssR-RBAM_030120___cssR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04914___cssR
# 2: RBAM_030120___cssR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 225
# Identity: 200/225 (88.9%)
# Similarity: 213/225 (94.7%)
# Gaps: 0/225 ( 0.0%)
# Score: 1065.0
#
#
#=======================================
BSNT_04914___ 1 MSYTIYLVEDEDNLNELLTKYLENEGWNITSFTKGEDARKKMTPSPHLWI 50
||||||||||||||||||||||||||||||||||||||||:|.|||||||
RBAM_030120__ 1 MSYTIYLVEDEDNLNELLTKYLENEGWNITSFTKGEDARKQMQPSPHLWI 50
BSNT_04914___ 51 LDIMLPDTDGYTLIKEIKAKDPDVPVIFISARDADIDRVLGLELGSNDYI 100
||||||||||||||||||.|||||||||||||||||||||||||||||||
RBAM_030120__ 51 LDIMLPDTDGYTLIKEIKEKDPDVPVIFISARDADIDRVLGLELGSNDYI 100
BSNT_04914___ 101 SKPFLPRELIIRVQKLLQLVYKEAPPVQKNEIAVSSYRVAEDAREVYDEN 150
:||||||||||||||||:|||||.|..:|..|.||||.|.|||||||||.
RBAM_030120__ 101 AKPFLPRELIIRVQKLLELVYKEQPAAKKTGITVSSYNVIEDAREVYDET 150
BSNT_04914___ 151 GNIINLTSKEFDLLLLFIHHKGHPYSREDILLKVWGHDYFGTDRVVDDLV 200
|:::|||||||||||||:||||||:||||||||:||||||||||||||||
RBAM_030120__ 151 GSLVNLTSKEFDLLLLFLHHKGHPFSREDILLKIWGHDYFGTDRVVDDLV 200
BSNT_04914___ 201 RRLRRKMPELKVETIYGFGYRLMSS 225
||||:|||.||||||||||||:|:|
RBAM_030120__ 201 RRLRKKMPGLKVETIYGFGYRMMTS 225
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.