Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04922 and RBAM_030190
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:27
# Commandline: needle
# -asequence dna-align/BSNT_04922___gerAB.1.9828.seq
# -bsequence dna-align/RBAM_030190___gerAB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04922___gerAB-RBAM_030190___gerAB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04922___gerAB-RBAM_030190___gerAB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04922___gerAB
# 2: RBAM_030190___gerAB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1151
# Identity: 766/1151 (66.6%)
# Similarity: 766/1151 (66.6%)
# Gaps: 103/1151 ( 8.9%)
# Score: 2327.5
#
#
#=======================================
BSNT_04922___ 1 ATGAGCCA-AAAACAGACTC-CACTGAAACTTAATACCTTTCAAGGTATT 48
|||||||| |||||| |||| ||.| ||.||||..|.||..|||||.|..
RBAM_030190__ 1 ATGAGCCAGAAAACA-ACTCACAAT-AAGCTTACAAGCTACCAAGGGACA 48
BSNT_04922___ 49 TCTATTG-TTGCAAATACAATGCTTGGGGCCGGACTTTTAACATTGCCGC 97
.| |||| ||.||||.||.|||||.||.||.|||||..|.||..||||||
RBAM_030190__ 49 GC-ATTGATTTCAAACACGATGCTCGGCGCGGGACTCCTCACCATGCCGC 97
BSNT_04922___ 98 GAGCGCTGACCACTAAGGCTAATACGCCTGACGGCTGGATCACGCTGATA 147
|.||||||.|..|.|.|||.|||.||||.||||||||||||.|| |.||.
RBAM_030190__ 98 GGGCGCTGTCATCAAGGGCAAATTCGCCGGACGGCTGGATCGCG-TTATG 146
BSNT_04922___ 148 T-TAGAAGGTTTCATTTTTATTTTCTTCATTTATTTAAACACGCTCATTC 196
| |.|||||..||||.|||||.||.||.||||||.|.||.|||||||||.
RBAM_030190__ 147 TCTGGAAGGCGTCATCTTTATCTTTTTGATTTATCTCAATACGCTCATTA 196
BSNT_04922___ 197 AGAAAAAACATCAATACCCTTCACTCTTTGAATATTTGAAGGAAGGGCTT 246
.||||||.|||||.|||...|||.|.|||||.|||.||||.|||||.||.
RBAM_030190__ 197 TGAAAAAGCATCAGTACGGATCATTATTTGATTATATGAATGAAGGACTC 246
BSNT_04922___ 247 GGGAAATGGATCGGCAGCATCATCGGCCTTTTGATCTGCGGCTATTTCCT 296
||.||||||...||.|..|||.||...|||.|||||||...||||||..|
RBAM_030190__ 247 GGCAAATGGGCGGGAAATATCGTCAATCTTATGATCTGTCTCTATTTTAT 296
BSNT_04922___ 297 CGGCGTAGCCAGCTTCGAGACACGGGCAATGGCTGAAATGGTGAAGTTTT 346
.||.||.|||||||||||..|.|||||.|||||.||||||||.|||||.|
RBAM_030190__ 297 AGGAGTCGCCAGCTTCGAAGCCCGGGCGATGGCGGAAATGGTCAAGTTCT 346
BSNT_04922___ 347 TCCTGCTGGAGAGAACCCCAATTCAAGTCA-TCATTTTAACGTTTAT--- 392
|..|..||||.|||||.||..|.|..|||| .|..||||.| |||||
RBAM_030190__ 347 TTTTATTGGAAAGAACGCCCGTGCCGGTCACGCTGTTTATC-TTTATCGC 395
BSNT_04922___ 393 TTGCTGCGGTATTTATTTAATCGTTGGGGGCTTAAGTGATGTGTCG--CG 440
.||.|.|| ||||||||||..|.||.|||.|.||.|| |.||| .|
RBAM_030190__ 396 CTGTTCCG---TTTATTTAATTATCGGCGGCATGAGCGA--TATCGGCAG 440
BSNT_04922___ 441 GCTGTTTCCCTTTTATTTAACGGTAACCATTATTATTTTGCTGATTGTGT 490
|||.|||||.||.|||||||||.|.||.||.||||||||||||.|.||||
RBAM_030190__ 441 GCTCTTTCCTTTCTATTTAACGATTACGATCATTATTTTGCTGGTGGTGT 490
BSNT_04922___ 491 TCGGGATCAGTTTTAAAATTTTTGATATCAATAATTTGCGTCCTGTTTTA 540
|.....||||.||||||||.||||||.|..|.||..||||.||.||..|.
RBAM_030190__ 491 TTTCTTTCAGCTTTAAAATATTTGATCTGGACAACCTGCGGCCGGTGCTC 540
BSNT_04922___ 541 GGCGAAGGCCTTGGACCC---ATTGCAAACTCCCTTACCGTCGTTTCCAT 587
||..|.||..||...||| ||.|| ||||.|.|||||||||||..|
RBAM_030190__ 541 GGGCAGGGATTTTCTCCCGTTATGGC---CTCCTTGACCGTCGTTTCTGT 587
BSNT_04922___ 588 CTCTTTTTTAGGAATGGAAGTGATGCTGTTTCTTCCTGAACATATGAAGA 637
.||.||.||.|||.|.||..|.|||||||||||.||.||..|..|.||.|
RBAM_030190__ 588 TTCCTTCTTGGGAGTTGAGATTATGCTGTTTCTCCCCGAGTACCTCAAAA 637
BSNT_04922___ 638 AAAAGAAATACACGTTCAGATATG-CGTCTCTAGGATTTTTAATTCCGAT 686
|.||.||..||||.|||.| .||| ||.|..|.||.|||...||.|||||
RBAM_030190__ 638 ATAAAAAGCACACATTCCG-CATGTCGGCCATGGGCTTTGGCATCCCGAT 686
BSNT_04922___ 687 TATTTTATATATCCTTACGTATATTATCGTTGTCGGAGCTTTGACCGCTC 736
|||||||||.|||.||||.||..||.||||.|||||.||.||.|||.|.|
RBAM_030190__ 687 TATTTTATACATCATTACCTACGTTCTCGTCGTCGGCGCCTTAACCACCC 736
BSNT_04922___ 737 CCGAGGTAAAAACGCTGATTTGGCCGACTATTTCTCTCTTTCAGTCCTTT 786
..||.||.|||||..||||.|||||.||.||..|.||||||||.||.|||
RBAM_030190__ 737 AGGATGTCAAAACAATGATCTGGCCTACGATCGCGCTCTTTCAATCATTT 786
BSNT_04922___ 787 GAGCTTAAAGGCATATTTATTGAACGGTTTGAATCGTTTTTACTGGTGGT 836
||..|.|||||..|.|||||||||.||||.||.||.|||||.||.||.||
RBAM_030190__ 787 GAAATCAAAGGGCTTTTTATTGAAAGGTTCGAGTCCTTTTTGCTTGTTGT 836
BSNT_04922___ 837 CTGGATCATCCAGTTTTTCACCAC--ATTTGTCATTTACGGATACTTTGC 884
||||||.|||||.||||||.|||| ||.|.||| ||||||||.||.||
RBAM_030190__ 837 CTGGATTATCCAATTTTTCGCCACCTATGTATCA--TACGGATATTTCGC 884
BSNT_04922___ 885 CGCT--------------AA----CGGGCTAAAGAAGACATTTGGATTAT 916
..|| || ||||||.|||.|||
RBAM_030190__ 885 GACTTCAGCTCTTAATAAAATTTTCGGGCTGAAGCAGA------------ 922
BSNT_04922___ 917 CGACTAAAACAAGCATGGTGATTATC------GGTATAGCGGTCTTTTAT 960
|||| .|.|||.||| ||.||.||| ..||
RBAM_030190__ 923 -----AAAA-------AGGGATCATCTTCGTAGGAATTGCG-----ACAT 955
BSNT_04922___ 961 TTTTC---TCTCTG--GCCGGATGACGCCAATCAAG-TCATGATGTATAG 1004
|.||| ||..|| |||..|.|||||.|| |||| |.|||.|||..||
RBAM_030190__ 956 TCTTCGGATCATTGATGCCAAAAGACGCTAA-CAAGCTGATGCTGTTCAG 1004
BSNT_04922___ 1005 CGATTATCTTGGCTATA--TTTTTG--TCTCCCTGTTTCTGCTTCCGTTC 1050
.|||..|||.||||||| ||.||| |.|| |||.||||.||.||.
RBAM_030190__ 1005 TGATATTCTCGGCTATATCTTCTTGGTTTTC----TTTTTGCTGCCTTTA 1050
BSNT_04922___ 1051 ATTCTCTTTTTCATTGTAGCTCTCAAGAGGA---GGATTACAGCAAAATG 1097
.|..|.|||....|.||.|||.|.||.|||| .||..|.|||..||||
RBAM_030190__ 1051 CTGATGTTTGGAGTCGTCGCTGTGAAAAGGAAGGTGAAAAAAGCGCAATG 1100
BSNT_04922___ 1098 A 1098
|
RBAM_030190__ 1101 A 1101
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