Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04929 and RBAM_030240
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:28
# Commandline: needle
# -asequence dna-align/BSNT_04929.1.9828.seq
# -bsequence dna-align/RBAM_030240___yvqG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04929-RBAM_030240___yvqG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04929-RBAM_030240___yvqG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04929
# 2: RBAM_030240___yvqG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 979
# Identity: 548/979 (56.0%)
# Similarity: 548/979 (56.0%)
# Gaps: 215/979 (22.0%)
# Score: 1217.5
#
#
#=======================================
BSNT_04929 1 ATGAA----AAAAATGCTTGGCAA---ACTGTTGATCACTGCCGGTAT-- 41
||||| || |.|||.||| ||||.||....|..|||.|.|
RBAM_030240__ 1 ATGAAGCGTAA----GATTGCCAAAGGACTGATGGCGGCGTCCGTTCTGA 46
BSNT_04929 42 TCTG--GTTTGTTTCGCTGTTGTCGTAAAAGATGTGTTTGCTGCAGGCCT 89
|||| ||.||||| ||| ||.|||||.|||||||| |.|||.|
RBAM_030240__ 47 TCTGCTGTCTGTTT-----TTG--GTGAAAGAAGTGTTTGC--CGGGCGT 87
BSNT_04929 90 GGGTTTC------ATAAATGGCATAGAAGCCGATTCAGCCAGCGCATCGC 133
...|||| |..|| |.||||||.||.||.||.|||..|.|||
RBAM_030240__ 88 TTTTTTCCGTTGTACGAA----ACAGAAGCGGAATCGGCAAGCATACCGC 133
BSNT_04929 134 CGCGGGACATTGACAGCAT---GGTCATTGAGTCGG-ATAGCAAGGATGT 179
||||.|.|.|..|||||.| ||| ||.| |||| |.|| |.||||||
RBAM_030240__ 134 CGCGTGCCGTCAACAGCCTGTCGGT--TTCA-TCGGAACAG-ACGGATGT 179
BSNT_04929 180 CCGGATTATAGCGGAAGAACGAAGTGACATATCGGCAGGCATTTCAGGAG 229
....||.||.|||||||..||.|.|||.||..|||||..|||..|.|||.
RBAM_030240__ 180 AAAAATCATCGCGGAAGCGCGGAATGATATCGCGGCAAACATGACGGGAC 229
BSNT_04929 230 ACTCAGGAAAGTTATTTGTTACTGAAAACA----AAAGA-----AAACTG 270
...|.||.||..|.||||| ..|||.|| ||||| ||.||.
RBAM_030240__ 230 CGGCGGGGAAAATGTTTGT---CCAAAGCAGGGGAAAGACCCTCAATCTT 276
BSNT_04929 271 GAGCTGACCGTAAAGGAAAAAGAATTTCAATTTTTGAATGGGTTTAACCG 320
.| |.|| |||||.||||..||.||||||.|||||...|||.|.||
RBAM_030240__ 277 AA----AGCG--AAGGAGAAAGGGTTCCAATTTCTGAATCTCTTTCAGCG 320
BSNT_04929 321 TTCAACT-CTTATCGTCAGGCTTCCGTATGATTATAAAGGTGATCTGGCA 369
.|..|| ||.||.|||.|..||||||||||||||.|..|.||..|..|.
RBAM_030240__ 321 -CCCTCTGCTGATTGTCCGCATTCCGTATGATTATCATCGGGACATCACC 369
BSNT_04929 370 GTACGAACCTCAAGCGGC-GACTTGTCTGTGGCCGGGAA--------TGA 410
||.|..||.||||||||| |..||| |.||.|.|||.|| ||.
RBAM_030240__ 370 GTCCATACATCAAGCGGCAGCATTG-CCGTCGACGGAAACAAGGGGCTGT 418
BSNT_04929 411 CCATCTTGCGCTTTCCGGGCTGAACG-CAGTATCTGCGAGCGGAAATACG 459
| ||||||||....||| || |.|| ||||..|||||.||||
RBAM_030240__ 419 C--TCTTGCGCACCTCGG------CGTCCGT-TCTGTAAGCGGGAATA-- 457
BSNT_04929 460 AGCGTGACG--GACGTACGCCTTCAAGACCTGA--------AAGTGAAGG 499
||.|| ||.|.||| |.|||| |.|| |||.|||||
RBAM_030240__ 458 ----TGTCGCTGAAGCACG---TGAAGA-CGGATGTGTTTGAAGCGAAGG 499
BSNT_04929 500 CATCATCGGGGGATGTTTCCATTTCAAATACCGTCTCTAAAACAGCCGGC 549
.....||||| ||| |||| |.|.||||.|||
RBAM_030240__ 500 GGCTGTCGGG--------------CAA------TCTC-ACAGCAGCAGGC 528
BSNT_04929 550 ATTG---------------------ATTTAGCTTCAGGGGACGCAAATCT 578
.||| ..|||.|.|| |||| ||..||.
RBAM_030240__ 529 TTTGCGGCAAAAACGGGGGCTGTCCGCTTATCCTC--GGGA--CATGTCG 574
BSNT_04929 579 GGTT----CATGTATCAGGCTCTCTTGATGTGAAAATGACTTCAGGAGAT 624
||.| |||||..|.|||.|.|||||.|||....|..||||.|
RBAM_030240__ 575 GGCTTCAACATGTGGCGGGCGCCCTTGACGTGCGGGTCGCTTCCG----- 619
BSNT_04929 625 TTTAATGCTGTATTGA-----------AAAAGGTAACCGG----TCCCGT 659
||.||.|.|| |.|.|| ||| ||||||
RBAM_030240__ 620 ------GCAGTGTCGACGCCTCGCTTGAGACGG----CGGATGCTCCCGT 659
BSNT_04929 660 ATCTGTCACGCTGACAAGCG---GTGATGCTAATGTAAGCCTTCCCCAAA 706
|||.||||.|||..|.|||| |.|..||.| |.|||||.||..||.
RBAM_030240__ 660 ATCCGTCAGGCTTGCGAGCGGCAGCGCAGCGA---TCAGCCTGCCGAAAG 706
BSNT_04929 707 ACGGCTGCTTTGCAGTCAATGCTTTATCAGCAAGCGGATACGTCAG--TT 754
||||..|.|||.|.||.||.||.....|.||||||||| || ||
RBAM_030240__ 707 ACGGAAGTTTTACGGTGAACGCCGAGACGGCAAGCGGA------AGGATT 750
BSNT_04929 755 C-GCCG---TATTCATTTGCTGACAAAGCACATAAAGAA----CAGCATC 796
| |||| |||||.|| |||.|||.|...|||.||| ..||||
RBAM_030240__ 751 CGGCCGTCTTATTCCTT---TGAGAAAACGAGTAAGGAAGGCGGGGCAT- 796
BSNT_04929 797 ACATCACAGGCACGCAAGGAAGCGGCCGGCA-TCCAATCGACATCAAAAC 845
|.||.||||.|.||||.||||| ||.|| .||.||.||.|| ||||.
RBAM_030240__ 797 ---TTACCGGCATGAAAGGCAGCGG-CGCCAGGCCGATTGATAT-AAAAG 841
BSNT_04929 846 GGAC-AGCGGGGATCTAGCGATACGGTAG 873
.||| |||||..||.|.||..|.|..|||
RBAM_030240__ 842 TGACGAGCGGCAATATTGCACTGCAATAG 870
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