Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04940 and RBAM_030310
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:28
# Commandline: needle
# -asequence dna-align/BSNT_04940___yvrC.1.9828.seq
# -bsequence dna-align/RBAM_030310___yvrC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04940___yvrC-RBAM_030310___yvrC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04940___yvrC-RBAM_030310___yvrC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04940___yvrC
# 2: RBAM_030310___yvrC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1004
# Identity: 699/1004 (69.6%)
# Similarity: 699/1004 (69.6%)
# Gaps: 118/1004 (11.8%)
# Score: 2365.0
#
#
#=======================================
BSNT_04940___ 1 ATGAAAAAACGA-----GCCGGGATATGGACTGCGCTCCTGTT----GGC 41
|||||.|| || |||| |.|||.|.||||||.||.| |.|
RBAM_030310__ 1 ATGAAGAA--GATCACTGCCG---TCTGGGCGGCGCTCTTGGTCACCGCC 45
BSNT_04940___ 42 TGTTGTTATGCTGGCAGGCTG---CGGCAATCCTGC---GGATCAGAAGG 85
| ||.||.|.||.||||| |||| || ||| ||||||
RBAM_030310__ 46 T----TTGTGATCGCCGGCTGTTCCGGC------GCACAGGA--AGAAGG 83
BSNT_04940___ 86 ATTCAAA----GGCAAAACAAAA---------AACAGAAGTGTTCCCTGT 122
|| |||.|||||||| |||.||||..|||||.||
RBAM_030310__ 84 -----AAGCGCGGCCAAACAAAAAGCCGTCTCAACCGAAGCATTCCCGGT 128
BSNT_04940___ 123 CACCATTGATGATGCGTCGAACCAAGATGTAACCATCAAAAAAG-AGCCA 171
.||||||.|.|||||..|||||.||.|.|||||||| |||| ||.||
RBAM_030310__ 129 AACCATTAAGGATGCCGCGAACGAAAAAGTAACCAT----AAAGCAGGCA 174
BSNT_04940___ 172 ----AAAAAGATTGTTTCATTAATGCCGAGCAACACAGAAATTACATACG 217
||||| ||.|||||..|.|||||||||||.||.|||||||||||||
RBAM_030310__ 175 CCGGAAAAA-ATCGTTTCCCTCATGCCGAGCAATACGGAAATTACATACG 223
BSNT_04940___ 218 CACTCGGCCTTGGTGACAAAGTGGTCGGTGTCACCACAAACGATACCTAT 267
|.|||||.||.||.||.||.||.|..||.|||||.|||||.|||||.|||
RBAM_030310__ 224 CGCTCGGACTGGGAGATAAGGTCGCAGGCGTCACGACAAATGATACATAT 273
BSNT_04940___ 268 CCAAAGGAA---GTCAAAAAGGTTGA--GAAAGTCGGAGATATGAATGTA 312
||.||.||| ||.||||| | |||||||||||||||||||||.
RBAM_030310__ 274 CCGAAAGAAGCGGTAAAAAA-----ACCGAAAGTCGGAGATATGAATGTG 318
BSNT_04940___ 313 AACGTTGAAAAAGTCATTTCTCTAAAACCAGATCTCGTTCTGGCCCATGA 362
||||.||||||||||||..|.||.||.||.||||||||.||.|||||.|.
RBAM_030310__ 319 AACGCTGAAAAAGTCATCGCGCTGAAGCCGGATCTCGTGCTTGCCCACGC 368
BSNT_04940___ 363 GTCTTCCATGTCAGCATCAGCGGATGCCATCAAACAGCTGAAAGACGCGG 412
|||.||.|||||.||.||.||.|||||.||.||.||.||||||||.||||
RBAM_030310__ 369 GTCCTCTATGTCCGCTTCCGCCGATGCGATGAAGCAACTGAAAGATGCGG 418
BSNT_04940___ 413 GCATTACAGTGCTGACTGTCAATGATGCACAATCATTCTCCGAGGTGTAC 462
||||.||.||..|.||.|||||||||||.|||||.|||...||.||||||
RBAM_030310__ 419 GCATCACCGTCTTAACGGTCAATGATGCGCAATCGTTCCAAGACGTGTAC 468
BSNT_04940___ 463 AAATCAATCGAAATGATCGGAGAAGCTGGCGGGGCGGAGAAAA--AAGCC 510
|||||||||...||||||||..||||.|.| |||..|||||| |.||.
RBAM_030310__ 469 AAATCAATCAGCATGATCGGGAAAGCGGCC--GGCAAAGAAAAGCAGGCG 516
BSNT_04940___ 511 GATCAGCTCGTGAAAAGTATGAAATCAGATCTAAAGGATATTC------- 553
|||.||||..|.|||...||||||||.||.|| |||
RBAM_030310__ 517 GATAAGCTGATCAAATCGATGAAATCCGACCT--------TTCCGGCATA 558
BSNT_04940___ 554 -AAGAAAAAGCGAAAACCATTTC---AAAAGACGAGGAGAAAAGCGTATT 599
||.|.||||||....||||||| |||||||||..||||| |||||
RBAM_030310__ 559 GAAAAGAAAGCGGCGGCCATTTCTGAAAAAGACGAAAAGAAA---GTATT 605
BSNT_04940___ 600 TATCGAGGTTTCTCCTGATCCTGACATTTATACAACCGGAAAAGATACGT 649
..||||.||.|| |||||||...||.||.||.||.||||..||||
RBAM_030310__ 606 CGTCGAAGTGTC------TCCTGACGGCTACACGACGGGGAAAGGCACGT 649
BSNT_04940___ 650 TTATGAATGAAATGC-TGAATGTCATCCATGCTAAAAACGCAGCTGCGG- 697
|||||||.||||||| |||| |..||.||.||.||||||||.|| |||
RBAM_030310__ 650 TTATGAACGAAATGCTTGAA-GATATACACGCGAAAAACGCTGC--CGGC 696
BSNT_04940___ 698 -ATCAGACAGGATGGGTGCAAATGACAGACGAGGCGATCGTAAAACTCAA 746
..|||||.||.|||||||||.||||.||.||.|||||.||.|||.|.||
RBAM_030310__ 697 AGCCAGACCGGCTGGGTGCAATTGACGGATGAAGCGATTGTCAAAATGAA 746
BSNT_04940___ 747 TCCTGATGCAATTGTTACAACGGACGGTGTGAAAGC----GAAAGCTGTG 792
|||.||.|..||..||||.||.|||||.||.||.|| ||| |||
RBAM_030310__ 747 TCCGGACGTCATCATTACGACAGACGGCGTAAAGGCCGCTGAA----GTG 792
BSNT_04940___ 793 GAAAAACGCGATGGCTGGAGCGAAATCAATGCTGTGAAACATCATCGTGT 842
||||||||||..||||||.|.|...|||||||.||.|||||.||...|||
RBAM_030310__ 793 GAAAAACGCGCCGGCTGGGGTGCCGTCAATGCGGTCAAACACCACAATGT 842
BSNT_04940___ 843 ATATGATGTGGACCCTGATCTTGTGACACGTTCCGGTCCCCGTCTGATCG 892
.|||..|||.||.|||||.|||||.|||||.||.||.||.||.||..||.
RBAM_030310__ 843 CTATTCTGTTGATCCTGACCTTGTCACACGCTCAGGCCCGCGCCTTGTCA 892
BSNT_04940___ 893 AAGGGGTCGAAGAA-CTTGCGGAAAGCATTTACCCGGATACGTTTAAAGA 941
||||||||| |||| ||||||||||||.||||.||.||.|||||||||.|
RBAM_030310__ 893 AAGGGGTCG-AGAAGCTTGCGGAAAGCGTTTATCCTGAAACGTTTAAAAA 941
BSNT_04940___ 942 ATAA 945
.|||
RBAM_030310__ 942 GTAA 945
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