Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04940 and RBAM_030310

See DNA alignment / Visit BSNT_04940 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:28
# Commandline: needle
#    -asequence pep-align/BSNT_04940___yvrC.1.9828.seq
#    -bsequence pep-align/RBAM_030310___yvrC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04940___yvrC-RBAM_030310___yvrC.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04940___yvrC-RBAM_030310___yvrC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04940___yvrC
# 2: RBAM_030310___yvrC
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 317
# Identity:     232/317 (73.2%)
# Similarity:   264/317 (83.3%)
# Gaps:           6/317 ( 1.9%)
# Score: 1175.5
# 
#
#=======================================

BSNT_04940___      1 MKKRAGIWTALLLAVVMLAGCGNPADQKDSKAKQK---TEVFPVTIDDAS     47
                     |||...:|.|||:...::|||.. |.::.|.||||   ||.|||||.||:
RBAM_030310__      1 MKKITAVWAALLVTAFVIAGCSG-AQEEGSAAKQKAVSTEAFPVTIKDAA     49

BSNT_04940___     48 NQDVTIKKEPKKIVSLMPSNTEITYALGLGDKVVGVTTNDTYPKEVKKVE     97
                     |:.||||:.|:||||||||||||||||||||||.|||||||||||..|..
RBAM_030310__     50 NEKVTIKQAPEKIVSLMPSNTEITYALGLGDKVAGVTTNDTYPKEAVKKP     99

BSNT_04940___     98 KVGDMNVNVEKVISLKPDLVLAHESSMSASADAIKQLKDAGITVLTVNDA    147
                     ||||||||.||||:|||||||||.|||||||||:||||||||||||||||
RBAM_030310__    100 KVGDMNVNAEKVIALKPDLVLAHASSMSASADAMKQLKDAGITVLTVNDA    149

BSNT_04940___    148 QSFSEVYKSIEMIGEAGGAEKKADQLVKSMKSDLKDIQEKAKTISKDEEK    197
                     |||.:|||||.|||:|.|.||:||:|:|||||||..|::||..||:.:||
RBAM_030310__    150 QSFQDVYKSISMIGKAAGKEKQADKLIKSMKSDLSGIEKKAAAISEKDEK    199

BSNT_04940___    198 SVFIEVSPDPDIYTTGKDTFMNEMLNVIHAKNAAADQTGWVQMTDEAIVK    247
                     .||:|||||.  |||||.|||||||..|||||||..||||||:|||||||
RBAM_030310__    200 KVFVEVSPDG--YTTGKGTFMNEMLEDIHAKNAAGSQTGWVQLTDEAIVK    247

BSNT_04940___    248 LNPDAIVTTDGVKAKAVEKRDGWSEINAVKHHRVYDVDPDLVTRSGPRLI    297
                     :|||.|:|||||||..||||.||..:||||||.||.|||||||||||||:
RBAM_030310__    248 MNPDVIITTDGVKAAEVEKRAGWGAVNAVKHHNVYSVDPDLVTRSGPRLV    297

BSNT_04940___    298 EGVEELAESIYPDTFKE    314
                     :|||:||||:||:|||:
RBAM_030310__    298 KGVEKLAESVYPETFKK    314


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