Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04947 and RBAM_030340
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:29
# Commandline: needle
# -asequence dna-align/BSNT_04947___yvrG.1.9828.seq
# -bsequence dna-align/RBAM_030340___yvrG1.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04947___yvrG-RBAM_030340___yvrG1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04947___yvrG-RBAM_030340___yvrG1.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04947___yvrG
# 2: RBAM_030340___yvrG1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1817
# Identity: 1282/1817 (70.6%)
# Similarity: 1282/1817 (70.6%)
# Gaps: 148/1817 ( 8.1%)
# Score: 4417.5
#
#
#=======================================
BSNT_04947___ 1 ATGAGGTTAAGATGGAAGTTTTTGTTTCACTTTTTCGGCCAGATGCTGAT 50
|||||..|..|..|.||.|||.||.|.|||||||||||.|||.|||||.|
RBAM_030340__ 1 ATGAGAATGCGCGGAAAATTTCTGCTCCACTTTTTCGGACAGCTGCTGCT 50
BSNT_04947___ 51 TGTGATCCTGCTGCTTACGGTTATGCTTGTTGCGTCGTTTTTCTATTTAG 100
|||.|||||||||.|..|.|||.||...||.||.||.||.||||||||.|
RBAM_030340__ 51 TGTCATCCTGCTGATGTCCGTTTTGGCCGTCGCTTCTTTCTTCTATTTGG 100
BSNT_04947___ 101 ACGCCCGTTTTAGCGATGCGGAATCCAATTCAGGGCTGACGAAAGCAACG 150
|....|||||.|||||.||||||.|||||.|.||.|||||.|||||.|||
RBAM_030340__ 101 ATTGGCGTTTCAGCGAAGCGGAAGCCAATGCGGGACTGACCAAAGCGACG 150
BSNT_04947___ 151 ACCGACACACTTGAGGCATATCTCGATGTAAACGAAGACGGGACATGGGA 200
.|.|||.|..||||.||.|..||.|||..||||||||||||.||||||||
RBAM_030340__ 151 GCAGACTCGTTTGAAGCGTGGCTTGATAAAAACGAAGACGGCACATGGGA 200
BSNT_04947___ 201 AGTGGATAATTTCCTGAAGAAATCTGTTGAT----AAACAGCACGGCTGG 246
.||.|||.|.||..|.|||| |||.|.| ||.|||.|.||||||
RBAM_030340__ 201 TGTCGATGAGTTTTTAAAGA----TGTCGGTCCGAAAGCAGAAGGGCTGG 246
BSNT_04947___ 247 ATGCAAATCAT---TGATTCGGAA-GGAAACACTGATTATTCCTACGGCG 292
.||||.||||| |||| || |.|||.||.||.||..|.|||.|.|
RBAM_030340__ 247 CTGCAGATCATTAATGAT----AATGAAAAAACGGACTACGCGTACAGAG 292
BSNT_04947___ 293 TGCCAAAAGACGTGCCGGGCACCTATACCAAGAAAGAGCTTTTGTCTATT 342
||||.||||||||.|||.||...||.|.||..|||||.||.||.||.|||
RBAM_030340__ 293 TGCCGAAAGACGTCCCGAGCCATTACAGCAGAAAAGATCTCTTATCCATT 342
BSNT_04947___ 343 TATAAAACCA-----AAAAGCTTCATAACTATAAACTGAATTATTGGGCC 387
| |||| ..||..||.|.|||||.||.||||||||.|||.|.
RBAM_030340__ 343 T-----ACCAGTACCGGAATTTTGACAACTACAAGCTGAATTACTGGACG 387
BSNT_04947___ 388 ATCAATATTGAAGATAAGTCGTATCTTCTATTGTCCGGCTGGAAATCAAA 437
.|||..||..|.|||.||.|.|||.|..|..|||.||||||||||||...
RBAM_030340__ 388 GTCACGATAAATGATGAGACCTATTTGATTCTGTTCGGCTGGAAATCCGC 437
BSNT_04947___ 438 AAGTGAACAGCTCCTGACTTCCGTTGAAAAGCGTGAACAAAAGA------ 481
.|||||.|||||.||.||||.|.|.|| |.||.|.||
RBAM_030340__ 438 CAGTGAGCAGCTTCTCACTTACATCGA--------ATCACAGGAGCCATC 479
BSNT_04947___ 482 --TAGACTCACTAGCGCACTATAAGTCTAGTACCATCGACTATATTAAAC 529
|.|..||.||..|.||.|||||....||.||.||.||.||||||||||
RBAM_030340__ 480 CCTCGCTTCCCTTTCTCAATATAAAAAGAGCACGATTGATTATATTAAAC 529
BSNT_04947___ 530 GGAAAAAAGGCGCCATTTACCTGTT---AGACAGCAATGGAAAGATTCTC 576
||.|||||||.||..|.|||||..| ||||||| ||.|
RBAM_030340__ 530 GGGAAAAAGGGGCGGTCTACCTTCTCGAAGACAGC---GGCA-------- 568
BSNT_04947___ 577 GACAGC--------ATCAATAGCACAAAAAGCGAAAGAAAAACGATGAAC 618
|||.|| |||||.|||||.||||..|||.|.||.||..|.||.
RBAM_030340__ 569 GACTGCTCGGGGATATCAACAGCACGAAAAAAGAACGGAACACCGTCAAT 618
BSNT_04947___ 619 CAGCTGGAGCTGCTTAAATACAGCTCTAAGCCTTGGAACTATAAGCGGGA 668
.||||.||..||||.||||||||.||.|||||.|||||.||.||.|||||
RBAM_030340__ 619 GAGCTTGAATTGCTGAAATACAGTTCCAAGCCGTGGAATTACAAACGGGA 668
BSNT_04947___ 669 AATTTCCGTTAAGATCCTCAATAAAGAC-AGATGGATGGTCGCTACGGTG 717
||||||..||||.|..|||.||||| || |.||||||||||||..|||||
RBAM_030340__ 669 AATTTCTTTTAAAAGACTCGATAAA-ACGAAATGGATGGTCGCGTCGGTG 717
BSNT_04947___ 718 CCAAACCCAGTCTATGTAACCGATCAGGAGTTTAACAAATCATTCCTGAA 767
||.|||||.||.||..|..|||||||.|||||||||||||||||..|||.
RBAM_030340__ 718 CCGAACCCCGTGTACATCCCCGATCACGAGTTTAACAAATCATTTTTGAG 767
BSNT_04947___ 768 GGTTGT-ATTAAAAGCGATGTTTCTCGTGATGGCCGTTTTGTTCATGTA- 815
...||| ||.|||| |..|.||.|||.||||.|...|||| .|||
RBAM_030340__ 768 AAATGTGATGAAAA-CCCTCTTCCTCTTGATCGGAATTTT-----AGTAT 811
BSNT_04947___ 816 -TATCATTTGGA---TGACCGTTTGGTA-TATGTTCCGATTCGGGCT-GC 859
|||.||.||.| |||||.|.||||| |.| |||||.||| |||| ||
RBAM_030340__ 812 TTATGATCTGCATCTTGACCATCTGGTACTCT-TTCCGTTTC-GGCTGGC 859
BSNT_04947___ 860 CGATTTTTCACACGATTAGATGGCTGGTCAATCTGTCAAAAGGGAAGCTT 909
||.|.|||||.||.||.|.||||||.||||||.|.|||||.||...||||
RBAM_030340__ 860 CGCTGTTTCATACCATCAAATGGCTCGTCAATTTATCAAAGGGCCGGCTT 909
BSNT_04947___ 910 GAGGAACCCAGAAACCG----GGACGGCCGTCCTGTCAGCAAAAATAAAA 955
||.||.||.|..||||| ||||.|||| |||||||||||.||||
RBAM_030340__ 910 GAAGAGCCGAAGAACCGCAAAGGACAGCCG----GTCAGCAAAAACAAAA 955
BSNT_04947___ 956 AGGGAAAAATCAAACAGCCGTACCGCTTCTTCGGTGAGATATTTGAATCA 1005
|.||.||||..||||||||||.||||||.||||..|||||.||.|||||.
RBAM_030340__ 956 AAGGCAAAACAAAACAGCCGTTCCGCTTTTTCGCCGAGATTTTCGAATCG 1005
BSNT_04947___ 1006 ATGGATCAGCTGACTGAAACGCTGAGAAGGGATAAAAGAAACAGAGAAAA 1055
||||||||||||||.||.|||||||...|||||||.|.||||||||||||
RBAM_030340__ 1006 ATGGATCAGCTGACCGACACGCTGAAGCGGGATAAGAAAAACAGAGAAAA 1055
BSNT_04947___ 1056 AATCCAGGCGACAAGGGAAGAATGGATTGCCGGTTTGTCACATGACTTAA 1105
|||||||||||||||||||||||||||.|||||..||...||||||||||
RBAM_030340__ 1056 AATCCAGGCGACAAGGGAAGAATGGATCGCCGGGCTGAGCCATGACTTAA 1105
BSNT_04947___ 1106 AAACACCGCTCAGCAGCATTTACGGCTACAGCATGATGCTCGAGTCGAAG 1155
||||.|||||.||||..||||||||||||||||||||||||||.||||||
RBAM_030340__ 1106 AAACCCCGCTGAGCACGATTTACGGCTACAGCATGATGCTCGAATCGAAG 1155
BSNT_04947___ 1156 CAGTATGACTGGTCGCCGGAAGAAGTGAAAGAAATGGGGCAGGTTGTCAG 1205
||.||.||||||.|.|||||||||||.|||||||||||||||.|.|||.|
RBAM_030340__ 1156 CAATACGACTGGACCCCGGAAGAAGTCAAAGAAATGGGGCAGATCGTCCG 1205
BSNT_04947___ 1206 AGAAAAATCTGAATACATGTCTAAGCTGATTGAAGACTTAAATTTAACGT 1255
.||||||||.|||||.|||||.|||||||||||.||||||||.|||||.|
RBAM_030340__ 1206 GGAAAAATCAGAATATATGTCGAAGCTGATTGAGGACTTAAACTTAACAT 1255
BSNT_04947___ 1256 ATCGGCTGAAAAATGATGCTCTTCCTATTGAGAGAAATCTCACTAGC--C 1303
|.||.||.|||||.|..||.||.||.||.||..| || |
RBAM_030340__ 1256 ACCGCCTCAAAAACGCGGCCCTCCCGATCGAACG-----------GCGGC 1294
BSNT_04947___ 1304 TTATC---------CCGTTTTTTAAAAATGTCATTGAGGATTTTAAGAAA 1344
|.||| ||||||.|.|.|||.||||...|.|||||.|.||||
RBAM_030340__ 1295 TGATCAACGTCGTGCCGTTTATCAGAAACGTCACGAACGATTTCACGAAA 1344
BSNT_04947___ 1345 AATCCGTTTTCTGAAGGCTATGATATCTCGTTTGTATCCAAA---GAAGA 1391
||..||||.||.|||||||||||.|||.|.||||.|.||||| |||||
RBAM_030340__ 1345 AACACGTTCTCGGAAGGCTATGACATCGCCTTTGAAACCAAAAAGGAAGA 1394
BSNT_04947___ 1392 GCA-TATTGAATTTGCCCTTGATGAAGCGTGGTTCAGGCGCATATTAGAA 1440
|| |.|| ||.|||.|||||||||||||||||.|.||.||..|.||.
RBAM_030340__ 1395 -CATTCTT---TTCGCCATTGATGAAGCGTGGTTCCGCCGTATTCTGGAG 1440
BSNT_04947___ 1441 AACCTCCTTGGGAATGCCGTGAAGCACAACGGCAAAGGAACAGAGATTCA 1490
||.||.||.|..||.||.||.|||||.||....|||||.||.|..||||.
RBAM_030340__ 1441 AATCTGCTGGCAAACGCGGTTAAGCATAATAAGAAAGGGACCGCCATTCG 1490
BSNT_04947___ 1491 AGTCATTCTGGAGCAAAC-----AAAAAATCATATATCTTTAAAGGTGAA 1535
.|||.|.||.|||.||.| ||.|..|||| |.|.||||||||
RBAM_030340__ 1491 GGTCGTGCTTGAGGAATCAGCCGAACAGCTCAT-----TCTGAAGGTGAA 1535
BSNT_04947___ 1536 GGACAATGGGAAAGGAATGGATGAAGAAACGA-TCACCCATTTGTTTAAC 1584
.||.||.||.|.|||||||||.||.||||||| ||| |||..||||||||
RBAM_030340__ 1536 AGATAACGGAAGAGGAATGGACGACGAAACGATTCA-CCAGCTGTTTAAC 1584
BSNT_04947___ 1585 CGTTACTACAGAGGGACGAACACAAAAGATTCAACTGCC--------GGA 1626
|||||.|||.|.||.|||||.||.|||| ||| |||
RBAM_030340__ 1585 CGTTATTACCGGGGAACGAATACGAAAG--------GCCCGTCAGAAGGA 1626
BSNT_04947___ 1627 ACGGGTCTCGGGCTCGCGATTGCCAAGGAGCTTGTCCATCTGCATAACGG 1676
|||||.|||||||||||.||||||||||||||.||.||.||.||||||||
RBAM_030340__ 1627 ACGGGACTCGGGCTCGCCATTGCCAAGGAGCTGGTTCACCTTCATAACGG 1676
BSNT_04947___ 1677 AACGATACATGTGAACAGCAGAATGAACATTGGAACGGTCATTACCATCC 1726
|||.||.|||||.|||||||||||.|.|...||||||||.|||||.||.|
RBAM_030340__ 1677 AACCATCCATGTCAACAGCAGAATCAGCGCCGGAACGGTGATTACGATTC 1726
BSNT_04947___ 1727 TTTTTAAAAAACAATAA 1743
|||||||||||.|.|.|
RBAM_030340__ 1727 TTTTTAAAAAAGATTGA 1743
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