Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04987 and RBAM_030600
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:31
# Commandline: needle
# -asequence dna-align/BSNT_04987___yvgQ.1.9828.seq
# -bsequence dna-align/RBAM_030600___yvgQ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04987___yvgQ-RBAM_030600___yvgQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04987___yvgQ-RBAM_030600___yvgQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04987___yvgQ
# 2: RBAM_030600___yvgQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1722
# Identity: 1390/1722 (80.7%)
# Similarity: 1390/1722 (80.7%)
# Gaps: 12/1722 ( 0.7%)
# Score: 5597.5
#
#
#=======================================
BSNT_04987___ 1 ATGGTGACCAAAATTCTAAAAGCACCGGACGGCTCTCCAAGTGATGTTGA 50
|||||||.|||.|||.|||||||.|||||.|||.||||||||||||||||
RBAM_030600__ 1 ATGGTGAACAACATTTTAAAAGCGCCGGAAGGCCCTCCAAGTGATGTTGA 50
BSNT_04987___ 51 ACGCATTAAAAAAGAAAGTGATTATTTGCGCGGCACGCTGAAAGAAGTGA 100
....||||||.||.||||||||||||||||||||||..||||||||||.|
RBAM_030600__ 51 GGAAATTAAAGAAAAAAGTGATTATTTGCGCGGCACATTGAAAGAAGTCA 100
BSNT_04987___ 101 TGCTCGATCGAA--TCAGTGCGGGAATTCCGGATGATGATAACCGCCTGA 148
|||||||.||.| ||| ||.||.||.|||||.|||||.|||||.||||
RBAM_030600__ 101 TGCTCGACCGGATTTCA--GCCGGCATCCCGGACGATGACAACCGGCTGA 148
BSNT_04987___ 149 TGAAACACCACGGCAGTTATTTGCAGGATGACCGCGACCTCCGAAATGAA 198
||||.||.|||||.||.||.|||||||||||||||||.|||||.||||||
RBAM_030600__ 149 TGAAGCATCACGGAAGCTACTTGCAGGATGACCGCGATCTCCGTAATGAA 198
BSNT_04987___ 199 CGCCAAAAGCAGAAGCTTGAGCCCGCATATCAGTTCATGCTGCGCGTGCG 248
||.|||||.||.||||||||.||.||.||||||||||||||||||||.||
RBAM_030600__ 199 CGTCAAAAACAAAAGCTTGAACCGGCTTATCAGTTCATGCTGCGCGTTCG 248
BSNT_04987___ 249 TATGCCAGGGGGCGTCTCGACGCCTGAACAATGGCTTGTCATGGATGACC 298
.||||||||.|||||.||.||.||.|||||||||||||||||||||||.|
RBAM_030600__ 249 GATGCCAGGCGGCGTGTCAACTCCGGAACAATGGCTTGTCATGGATGAAC 298
BSNT_04987___ 299 TGTCCCAGAAATACGGGAACGGCACATTAAAATTGACGACACGTGAAACA 348
||.|.||.||||||||.|||...|||||.||..||||.||.||||||||.
RBAM_030600__ 299 TGGCGCAAAAATACGGAAACAATACATTGAAGCTGACAACGCGTGAAACG 348
BSNT_04987___ 349 TTCCAAATGCACGGAATTCTGAAATGGAACATGAAGAAAACCATTCAGAC 398
||||||||||||||||||.|.||||||||||||||.|||||.|||||||.
RBAM_030600__ 349 TTCCAAATGCACGGAATTTTAAAATGGAACATGAAAAAAACGATTCAGAA 398
BSNT_04987___ 399 GATCCACTCAGCACTTTTGGATACGATCGCAGCCTGCGGAGACGTAAACC 448
.|||.|..|.||.||..|.|||||.||.||.|||||||||||.||.||||
RBAM_030600__ 399 AATCAATGCGGCGCTGCTTGATACCATTGCGGCCTGCGGAGATGTCAACC 448
BSNT_04987___ 449 GTAACGTCATGTGTGCATCAAACCCTTATCAATCTGAAATCCACTCAGAG 498
|.|||||||||||.||.|||||.||..|.||.||||||||.||..|.||.
RBAM_030600__ 449 GAAACGTCATGTGCGCTTCAAATCCGCACCAGTCTGAAATTCATGCGGAA 498
BSNT_04987___ 499 GTATACGAGTGGTCTAAAAAATTAAGTGATGATCTGCTGCCGCGGACGAG 548
||||||||.|||||.||.|||||.||.|||||.||.||.|||||.|||||
RBAM_030600__ 499 GTATACGAATGGTCGAAGAAATTGAGCGATGACCTTCTTCCGCGCACGAG 548
BSNT_04987___ 549 AGCATATCATGAAATTTGGCTTGATGAGGAAAGAGTTGCCGGCACGCCGG 598
|||.|||||||||||.|||||||||||||||.|.||.||.|||||.||.|
RBAM_030600__ 549 AGCCTATCATGAAATCTGGCTTGATGAGGAACGTGTGGCGGGCACTCCTG 598
BSNT_04987___ 599 A---GGAAGAAGTCGAGCCAATGTACGGACCGCTCTATCTGCCGCGGAAG 645
| |||| |.| ||.||.||||||||.|||||.||.|||||||||||.
RBAM_030600__ 599 ACACGGAA-ACG--GAACCGATGTACGGGCCGCTGTACCTGCCGCGGAAA 645
BSNT_04987___ 646 TTTAAAATCGGTATTGCCGTTCCGCCGTCTAATGATATTGACGTCTTTTC 695
||.||||||||.||.|||||.||.|||||.||||||||.||.||||.|||
RBAM_030600__ 646 TTCAAAATCGGAATCGCCGTGCCTCCGTCCAATGATATCGATGTCTATTC 695
BSNT_04987___ 696 ACAAGATCTGGGATTCATTGCGATTGTCGAGGATGGCAAGCTGATCGGTT 745
.||||||||.||.||||||||.||.||.|||||.|||...||.|||||.|
RBAM_030600__ 696 TCAAGATCTCGGCTTCATTGCCATCGTGGAGGAAGGCCGTCTTATCGGAT 745
BSNT_04987___ 746 TTAACGTGGCAATCGGCGGCGGTATGGGAATGACGCATGGCGATACTGCG 795
|.|||||.|||||||||||||||||||||||||||||.||||||||.||.
RBAM_030600__ 746 TCAACGTTGCAATCGGCGGCGGTATGGGAATGACGCACGGCGATACGGCC 795
BSNT_04987___ 796 ACATATCCGCAATTAGCCAAGGTGATCGGTTTCTGCCGGCCTGAGCAAAT 845
||.||||||||..|..|.||.||.|||||.||||||...||.|||||..|
RBAM_030600__ 796 ACTTATCCGCAGCTTTCAAAAGTCATCGGCTTCTGCAAACCGGAGCAGCT 845
BSNT_04987___ 846 GTATGACGTTGCTGAAAAAACGATTACGATTCAGCGTGATTACGGCAACC 895
||||||.||.||.||||||||.||||||||||||||.||||||||.||||
RBAM_030600__ 846 GTATGATGTAGCGGAAAAAACCATTACGATTCAGCGCGATTACGGAAACC 895
BSNT_04987___ 896 GTTCTGTCCGTAAAAATGCGCGGTTCAAATACACAGTTGACCGCCTCGGT 945
||||.|||.|.||.|||||..|.|||||.|||||.||||||||.|||||.
RBAM_030600__ 896 GTTCCGTCAGAAAGAATGCCAGATTCAAGTACACTGTTGACCGTCTCGGG 945
BSNT_04987___ 946 TTAGAAAACGTAAAAGAAGAATTGGAAAACCGTCTCGGCTGG-AGCCTGG 994
.|.|||||||||||||..||..||||||||||.||||||||| || ||||
RBAM_030600__ 946 CTGGAAAACGTAAAAGCCGAGCTGGAAAACCGCCTCGGCTGGCAG-CTGG 994
BSNT_04987___ 995 AAGAAGCGAAGCCGTATCATTTCGATCATAACGGCGACCGCTATGGCTGG 1044
|.||||||||.||.||||||||.||.||||||||||||||.||.||.|||
RBAM_030600__ 995 ATGAAGCGAAACCTTATCATTTTGACCATAACGGCGACCGTTACGGATGG 1044
BSNT_04987___ 1045 GTGGAAGGCATCGAGGATAAATGGCATTTCACGCTGTTTGTCGAAGGCGG 1094
|||.|.||..|..|.|.|||||||||.||.|||.|||||.||||||||||
RBAM_030600__ 1045 GTGAAGGGTGTAAAAGGTAAATGGCACTTTACGATGTTTATCGAAGGCGG 1094
BSNT_04987___ 1095 CCGTATAACGGATTACGATGATTATAAGCTGATGACTGGCTTGCGGGAAA 1144
|||..|.|||||.||.||..||||||||||||||||.||.|||||.||||
RBAM_030600__ 1095 CCGCGTCACGGACTATGAGAATTATAAGCTGATGACGGGATTGCGTGAAA 1144
BSNT_04987___ 1145 TCGCCAAAGTTCATACAGGTGAGTTCCGGCTGACAGCCAATCAGAACTTA 1194
||||||||||.|||||.||.||.|||||.||.||..|.|||||.|||.|.
RBAM_030600__ 1145 TCGCCAAAGTCCATACGGGAGATTTCCGTCTCACCTCTAATCAAAACCTG 1194
BSNT_04987___ 1195 ATGATTGCGAACGTTTCAAGCGATAAAAAAGAAGAAATCAGTGCTTTAAT 1244
||.||.|..||.||.||.|||.|.|||||..||.|||||||.||.|||||
RBAM_030600__ 1195 ATTATCGGCAATGTCTCGAGCCAGAAAAAGAAACAAATCAGCGCATTAAT 1244
BSNT_04987___ 1245 TGAACAATACGGACTAACTGACGGCAAGCACTATTCAGCGCTTCGCCGCA 1294
.|||||||||||.||.||.||||||..|||..||||.||.||.|||||||
RBAM_030600__ 1245 CGAACAATACGGTCTGACAGACGGCCGGCAGCATTCCGCCCTCCGCCGCA 1294
BSNT_04987___ 1295 GCTCGATGGCGTGCGTCGCTCTTCCGACCTGCGGATTGGCAATGGCTGAA 1344
|.||.|||||.||||||||.||||||||.|||||..|.||.|||||.|||
RBAM_030600__ 1295 GTTCAATGGCTTGCGTCGCGCTTCCGACATGCGGGCTCGCCATGGCCGAA 1344
BSNT_04987___ 1345 GCAGAACGTTATTTGCCGACCCTGTTAGATAAGATTGAAGAGATTATTGA 1394
||.||.||.|||.||||||...||.|.||||||||||||||.|||.||||
RBAM_030600__ 1345 GCCGAGCGGTATCTGCCGAAATTGATTGATAAGATTGAAGACATTGTTGA 1394
BSNT_04987___ 1395 CGAAAACGGCCTTCGTGATCAGGAAATCACCATTCGCATGACAGGATGCC 1444
|||||||||.||.||.|||.|.|||||||||||.||.|||||.|||||||
RBAM_030600__ 1395 CGAAAACGGGCTGCGGGATGAAGAAATCACCATCCGTATGACCGGATGCC 1444
BSNT_04987___ 1445 CGAACGGCTGTGCACGTCATGCACTCGGTGAGATCGGATTTATCGGAAAG 1494
||||.|||||.||.||.|||||.|||||.||.||||||||||||||||||
RBAM_030600__ 1445 CGAATGGCTGCGCCCGCCATGCGCTCGGCGAAATCGGATTTATCGGAAAG 1494
BSNT_04987___ 1495 GCGCCGGGCAAATATAATATGTATCTTGGCGCTGCGTTTGACGGAAGCCG 1544
|||||.||.|||||||||||||||.|.||.||.|||||||||||.|||||
RBAM_030600__ 1495 GCGCCCGGAAAATATAATATGTATTTAGGAGCGGCGTTTGACGGCAGCCG 1544
BSNT_04987___ 1545 TTTAAGCAAAATGTACCGTGAAAACATCGGTGAAGCAGACATTTTAAGCG 1594
|||.||||||||||||||.|||||.||||||||||..||.|||.|.||.|
RBAM_030600__ 1545 TTTGAGCAAAATGTACCGGGAAAATATCGGTGAAGAGGAAATTCTGAGTG 1594
BSNT_04987___ 1595 AGCTGCGCATCCTTCTTTCCCGCTATGCGAAAGAACGTGAGGAAGGCGAG 1644
||||.||||.|.||||..|.|||||.||||||||.||||||||||||||.
RBAM_030600__ 1595 AGCTTCGCACCATTCTCCCGCGCTACGCGAAAGAGCGTGAGGAAGGCGAA 1644
BSNT_04987___ 1645 CATTTCGGTGACTTTGTCATCCGCGCGGGCATTATCAAAGCAACAACTGA 1694
||.|||||.||.||.|||||||||||.|||||.||.|||||.||.||.||
RBAM_030600__ 1645 CACTTCGGCGATTTCGTCATCCGCGCCGGCATCATTAAAGCGACGACAGA 1694
BSNT_04987___ 1695 CGGTACGAATTTTCATGATTGA 1716
|||.|||||||||||.||.|.|
RBAM_030600__ 1695 CGGCACGAATTTTCACGAATAA 1716
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