Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_04987 and RBAM_030600

See DNA alignment / Visit BSNT_04987 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:31
# Commandline: needle
#    -asequence pep-align/BSNT_04987___yvgQ.1.9828.seq
#    -bsequence pep-align/RBAM_030600___yvgQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04987___yvgQ-RBAM_030600___yvgQ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04987___yvgQ-RBAM_030600___yvgQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04987___yvgQ
# 2: RBAM_030600___yvgQ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 571
# Identity:     514/571 (90.0%)
# Similarity:   553/571 (96.8%)
# Gaps:           0/571 ( 0.0%)
# Score: 2784.0
# 
#
#=======================================

BSNT_04987___      1 MVTKILKAPDGSPSDVERIKKESDYLRGTLKEVMLDRISAGIPDDDNRLM     50
                     ||..|||||:|.|||||.||::||||||||||||||||||||||||||||
RBAM_030600__      1 MVNNILKAPEGPPSDVEEIKEKSDYLRGTLKEVMLDRISAGIPDDDNRLM     50

BSNT_04987___     51 KHHGSYLQDDRDLRNERQKQKLEPAYQFMLRVRMPGGVSTPEQWLVMDDL    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||:|
RBAM_030600__     51 KHHGSYLQDDRDLRNERQKQKLEPAYQFMLRVRMPGGVSTPEQWLVMDEL    100

BSNT_04987___    101 SQKYGNGTLKLTTRETFQMHGILKWNMKKTIQTIHSALLDTIAACGDVNR    150
                     :|||||.|||||||||||||||||||||||||.|::||||||||||||||
RBAM_030600__    101 AQKYGNNTLKLTTRETFQMHGILKWNMKKTIQKINAALLDTIAACGDVNR    150

BSNT_04987___    151 NVMCASNPYQSEIHSEVYEWSKKLSDDLLPRTRAYHEIWLDEERVAGTPE    200
                     ||||||||:|||||:||||||||||||||||||||||||||||||||||:
RBAM_030600__    151 NVMCASNPHQSEIHAEVYEWSKKLSDDLLPRTRAYHEIWLDEERVAGTPD    200

BSNT_04987___    201 EEVEPMYGPLYLPRKFKIGIAVPPSNDIDVFSQDLGFIAIVEDGKLIGFN    250
                     .|.|||||||||||||||||||||||||||:|||||||||||:|:|||||
RBAM_030600__    201 TETEPMYGPLYLPRKFKIGIAVPPSNDIDVYSQDLGFIAIVEEGRLIGFN    250

BSNT_04987___    251 VAIGGGMGMTHGDTATYPQLAKVIGFCRPEQMYDVAEKTITIQRDYGNRS    300
                     ||||||||||||||||||||:||||||:|||:||||||||||||||||||
RBAM_030600__    251 VAIGGGMGMTHGDTATYPQLSKVIGFCKPEQLYDVAEKTITIQRDYGNRS    300

BSNT_04987___    301 VRKNARFKYTVDRLGLENVKEELENRLGWSLEEAKPYHFDHNGDRYGWVE    350
                     ||||||||||||||||||||.||||||||.|:|||||||||||||||||:
RBAM_030600__    301 VRKNARFKYTVDRLGLENVKAELENRLGWQLDEAKPYHFDHNGDRYGWVK    350

BSNT_04987___    351 GIEDKWHFTLFVEGGRITDYDDYKLMTGLREIAKVHTGEFRLTANQNLMI    400
                     |::.|||||:|:||||:|||::||||||||||||||||:||||:||||:|
RBAM_030600__    351 GVKGKWHFTMFIEGGRVTDYENYKLMTGLREIAKVHTGDFRLTSNQNLII    400

BSNT_04987___    401 ANVSSDKKEEISALIEQYGLTDGKHYSALRRSSMACVALPTCGLAMAEAE    450
                     .||||.||::|||||||||||||:.:||||||||||||||||||||||||
RBAM_030600__    401 GNVSSQKKKQISALIEQYGLTDGRQHSALRRSSMACVALPTCGLAMAEAE    450

BSNT_04987___    451 RYLPTLLDKIEEIIDENGLRDQEITIRMTGCPNGCARHALGEIGFIGKAP    500
                     ||||.|:||||:|:|||||||:||||||||||||||||||||||||||||
RBAM_030600__    451 RYLPKLIDKIEDIVDENGLRDEEITIRMTGCPNGCARHALGEIGFIGKAP    500

BSNT_04987___    501 GKYNMYLGAAFDGSRLSKMYRENIGEADILSELRILLSRYAKEREEGEHF    550
                     ||||||||||||||||||||||||||.:||||||.:|.||||||||||||
RBAM_030600__    501 GKYNMYLGAAFDGSRLSKMYRENIGEEEILSELRTILPRYAKEREEGEHF    550

BSNT_04987___    551 GDFVIRAGIIKATTDGTNFHD    571
                     ||||||||||||||||||||:
RBAM_030600__    551 GDFVIRAGIIKATTDGTNFHE    571


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.